| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5191 |
|---|
| Symbol | |
|---|
| ID | 7969850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5514181 |
|---|
| End bp | 5515074 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644795785 |
|---|
| Product | succinyl-CoA synthetase subunit alpha |
|---|
| Protein accession | YP_002947059 |
|---|
| Protein GI | 239818149 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0074] Succinyl-CoA synthetase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR01019] succinyl-CoA synthetase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATCT ACATCAACAA AGACACCAAA GTCATCACGC AAGGCATCAC CGGCAAGACC
GGCCAGTTCC ACACCGAGAA GTGCCAGGAA TACGCGAACG GCAAGAACTG CTTCGTCGCG
GGCGTGAACC CCAAGAAGGC CGGCGAGTCG ATCTTCAACA TCCCGATCTT CGGTTCGGTG
AAGGAAGCCG CCTCGCAGAC CGGCGCCACC GTGTCGGTGA TCTACGTGCC GCCGGCAGGC
GCAGCCGCCG CCATCTGGGA AGCCGTCGAG GCCGACCTGG ACCTGGCGAT CTGCATCACC
GAAGGCATTC CGGTGCGCGA CATGCTCGAA GTGCGCAACA AGATGAAGGC CAAGGAAGCG
GCCGGCGGCA AGAAGACCCT GCTGCTGGGC CCCAACTGCC CCGGCCTCAT CACGCCCGAC
GAAATCAAGA TCGGCATCAT GCCTGGCCAC ATCCACCGCA AGGGCCGCAT CGGCGTGGTC
TCGCGCTCGG GCACGCTCAC GTATGAAGCC GTGGCGCAGC TGACCGAAAT CGGCCTTGGC
CAATCGTCGG CAGTCGGCAT CGGCGGCGAC CCGATCAACG GCCTCAAGCA CATCGACGTG
ATGAAGGCCT TCAACGACGA TCCCGACACC GACGCCGTCA TCATGATCGG CGAAATCGGC
GGCCCCGACG AAGCCGACGC GGCCCGCTGG TGCAAGGAAC ACATGAAGAA GCCGGTGGTC
GGCTTCATCG CCGGCGTCAC CGCCCCTCCC GGCAAGCGCA TGGGCCACGC CGGCGCGCTG
ATCTCGGGCG GTGCCGACAC GGCCGATGCC AAGCTCGCCA TCATGGAAGA GTGCGGCTTC
ACCGTGACGC GCAACTTCTC GGAACTGGCA AAACTGCTCA AGGCCCAGCT CTAA
|
|---|
| Protein sequence | MSIYINKDTK VITQGITGKT GQFHTEKCQE YANGKNCFVA GVNPKKAGES IFNIPIFGSV
KEAASQTGAT VSVIYVPPAG AAAAIWEAVE ADLDLAICIT EGIPVRDMLE VRNKMKAKEA
AGGKKTLLLG PNCPGLITPD EIKIGIMPGH IHRKGRIGVV SRSGTLTYEA VAQLTEIGLG
QSSAVGIGGD PINGLKHIDV MKAFNDDPDT DAVIMIGEIG GPDEADAARW CKEHMKKPVV
GFIAGVTAPP GKRMGHAGAL ISGGADTADA KLAIMEECGF TVTRNFSELA KLLKAQL
|
|---|
| |