| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5185 |
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| Symbol | |
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| ID | 7969844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5508001 |
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| End bp | 5508525 |
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| Gene Length | 525 bp |
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| Protein Length | 174 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644795779 |
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| Product | protein involved in methylation |
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| Protein accession | YP_002947053 |
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| Protein GI | 239818143 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.101493 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCGTC GTTCTATCGC ACGCAATGTG CAAAAGGGTT TCACCCTTAT CGAATTGATG
ATCGTTGTGG CGATCATTGG TATCTTGGCC GCTGTGGCGT TGCCTGCCTA CCAACAGTAC
ACCGTCAAGG CTCGTATGTC TGAGGTGGTT TTGGCGGCAT CTTCTTGTCG CACGACGATC
AGTGAGGGTG TTCAAACCAT GAACCCCGTC GGCGGAAGAG GCACGCTCAA CGCATGGGGT
TGCGAGGCAA ACACTGCAAA TGCTGCTGGT GCCGGCCCCA CGAAGATGGT TCAGTCGATT
ACGACGAGCG CAGATGGTGT TATTACCGTC AAGCCTGACC CAACCGCTCT TGGTGTCACT
CTCGCTCCTG CTACTGACTT CGTCACTTTG ACGCCGAAGA TTGGTGGCGC GGCTATCGAC
GTATCTAGCG CAGACAACAA GGACCAAGGA AAGGCAATCG CTGAGTGGAC ATGTGCAGGC
TCTACGGCTG CCATCCAGAA GTACCTCCCG GGTTCTTGCA AGTAA
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| Protein sequence | MNRRSIARNV QKGFTLIELM IVVAIIGILA AVALPAYQQY TVKARMSEVV LAASSCRTTI
SEGVQTMNPV GGRGTLNAWG CEANTANAAG AGPTKMVQSI TTSADGVITV KPDPTALGVT
LAPATDFVTL TPKIGGAAID VSSADNKDQG KAIAEWTCAG STAAIQKYLP GSCK
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