| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5179 |
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| Symbol | |
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| ID | 7969838 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5500067 |
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| End bp | 5503723 |
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| Gene Length | 3657 bp |
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| Protein Length | 1218 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644795773 |
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| Product | Tfp pilus assembly protein tip-associated adhesin PilY1-like protein |
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| Protein accession | YP_002947047 |
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| Protein GI | 239818137 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.252708 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGTGC TCGACAACTC CGGATCAATG AACTTTGAAT CTCAGGACGA ATATTCGGTT
AACAACGATT GCAAGGGGAC AGAGAAGGGA TGTAAAAATA AATATGGCTG GTATTCAAAT
CGATCCAGCG GAGCTAATAC GCAGTATTAC AACCCTTCTA TTACCTACAG CGCCAGGGTC
AGTTCAGATG GTACCAAGCT GACCAATCCA ATTCTCTTCG TCGACAACCA AGCATCCGAT
GATAGCTCGC CGAGCCACTC GGCCTACACG ACGGCAACAA CGGCAACTGG AAAGGCATTT
ACCTACCTCC AATGCGCGGA CACCGACTGC GCCAGTTCCA GTACCAGGAC CGAGACAACC
ATCAACTATC CACCGGGCAC CGGCACCATT AACTTGCCGG CAGGGCATAA GCGAACCGAT
TGCGGGAAGA ATACCGCCAC CTGTACCGCA GAGTTGGAAC GCCAGAACAT TGTCAATTGG
TACCGGTGGT ATCGAACTCG TACGCTTGCC GTCAGCACGG CGCTGGGCCA AGCGATGCAA
AGTTATGAGA ATAAATTCAG AGTCGGATAT GTTCAATACA ATGCCGACGG GTCTCCCGCA
AGCCATATCG TGCGGGGTGT AAATTATTTC AAGGATGACC CAGCCAATTC GGCAAACAAT
TGGAAGACGA AATTCTACGA TTGGATTTAT GGCATCAGTC CAAGTGGTGG AACGCCGAGT
CACAATGCAT TGACGCTTGC CGCCAATTAT TACGCTGGCA GTGAAACGGA AACCTCTTCT
GGATCTGCAC TCACCAATCC CTGGAAAAAC GATCCGACCA GTTCGGCCGC GATCGACAGC
AAGGATCTGA GCTGCAGGCG GGCATACGCC ATCGTGTTGT CCGATGGCGC CTGGAACGCC
CAGACTTCAA GTGGCGCCGG CACCAAATAT GCCAGTGTCC AAGGGTCTAC CAATTACAGC
GGAAATCCTT CGGGAAATAC GGCTTCGCTC CAATATAACC CTGCTGGGGC TACCGGATCC
GACAGCAGCA TTCTGGCAAC GAAGCTCGCA GCCCGAAGTC TCTATATCCC GTATGGTGAC
GGAGGAATCA GCAGCAATGG ATTTGCAGAC CTCGCCGCGC GCTATTTCTG GAATACGGAT
TTTTCCAAGC TCGCCAACAA CATCCCCCCA ATTGATGGCC AGCACAATCC CACGTTCTGG
CAGAACATGA CTACCTTCAC TATTGGCTGG GGATTGACGC CATCGGGTGA TTCGGGCACA
TCGGGTGGTT TGACTTGGGA GCAGATCAAC AAGTACAAAA TCGACTGGCT TGCAGGGCGA
ACGGTGACGC GTCCCAATTG GGCTGATGGT AATACGAGCG TTGACCTGAA CAGTCGATAT
ACCAGCGACA CGCTGCGTGT CAACGATTTC ATTCGCGCAG GTTTTGCCGG TGGAGGCCAA
GCCTACAGCG TCTATTCGGG CGATGATGTG CGTCGTGCCC TTGATAACGC CTTGAGCAGC
ATGGTGGGCT CGGGCAACGA CGCAGGCGTT GCTGTGTCGG GCAACAGCAG TGAATTCCAG
ACCCTGGAAA ATCAATACAA GTACACGACC GAATATCAGA CGGCGGAGAA CAGTGGCGAC
ATCAAGGCCT TCCAACTGAA CGCCAATGGT GGCTACCTCA ACGTAGACAC GTCCGGCAAG
CCGATTCCGG CTTGGTCCGC CAACGCCAAG ATGCCGACCC TGGTGAATCG GAAGATCTTT
GCGTTGTCGG CCTACGACGC CAATGCGCCT GATTCGGCGG CCGCAAAGCG CAAGGAATTG
AACTCCACCA CCACGCTGAC CAGCTTGCCA ACCGATTTCC AGGCGCTGTT GAATGCGGAC
AGCCTGCAGA AGCTTGACAA CAGCTTCATC CGCTACCTGC TTGGCGAGGA TCCGCAGGCG
GATATCAACG GCACTATCTA CCGCTCGCGC AAGCAGCCGA TCGGCGCTTC GGTCAACTCG
CCGCCGGTGT TTGTGGGCGG GCGTATCGAC ATGGGCTACA ACACCTACGG CTCGGTTGAT
GGCAAGGACT CTTATGCCGA TTACAAGACG CGCAAGACCA CGCTGCCGCC GACCATCTTT
GCTGCCACCA ACAACGGCAA GGTACATGTG CTGAATGCTG CCAAGAGTGA TACGGTGCTA
ACCGGGGTTC CGGCCGGCAC CGAACTGGCG GAGTTCATGC CAAAGGGGGC CATGGCTTCG
CAGATCGATT TAGCGAACAC CAACTTCCGC TTCCGTTACA CGCTGGATGG CCCGCTGGTA
GAGCAGGACG TGTACGACAC CAAGAGCCAG ACCCCCGCGG GCGGAACAGC GGCGTGGCGC
CAACTGGTGC TGGGCACGGG GGGGCGGGCC GGCAGCTTCA TGTACGGCCT GGAGTCGCCC
ATGAATACCG GCAACCGCAC GCCGACCAAG AATCACTTTC TCTGGGAACT GGACAGCAAG
ACCACCGGCT ACAGCGACTT GGCCAATGTG ACCAACAACC CCGCGGCGGG CCAACTGGAC
GATGGCACCT GGGTCATGCT GACGGGCAGC GGGCACTACG CGCCCTCGGG CAAGAAGATT
GGCCTGTATG TGGTGGAAGC GCTTACCGGC AAGCTCAAGG CGTTCATTCC GCTGCCGGCT
GGCTTTGGCA CGGACGACAC GGTCAACGGG GGCAATCGCG GCCTGGGCGG TGTGGTCGCG
GTGCGAGACA CGACTCGCAG GATCGTGGCG GCTTATGCCG GCGACGCCAA TGGCAACCTG
TGGCGCTTCG ATTTGCGCAG TTCGAAATTC GCTGTGTCCT ATGGCAGACC GCTGTTCACA
ACCGCGGGCG GCAAGAGCCA ACCCATTTAC GCCGCTCCCA CATGGCAGAC GCACCCCGGC
GACGCGACCG CCTGCACGTA CAGCACTACC TCGCAATGCG GTGCCATTGT GGTGGTGGGC
ACCGGAATCC TGCTGGACGA AGACGATCTG GCGACGCCGG CCACAAAGCA GGCGATCTAC
GGCATCTGGG ACCAGACGCC GATCGGGGGT GATGACAAGG CAAGCTTCGG CAAGGTTGCG
GTCACGGACC TGGTGGCGCA AACCATCGAC CTGACCTCGG CCAAGGTAGG AACGGGCATC
GAAACCGGAA AGAACTTCTA CCAGGTCAGC GCCAATCCCG TGGACTGGAA GACGAAGAAG
GGATGGCTGC TGAATCTTGG CGTGATCGCC TATAGCGGAG CCATGGCGAA CGGTGAGCGG
GTGGTGGGCG ATCTGGCCAA CCTGGGCAGC AGCGTCATGA TCACCTCTTT CCTGCCTGAG
GACAGGAACC TGGGCCTCGA ATCGTGTACG GCCACCGGTA GCTTGCCCAA CATCATCTAT
GTGCTGGACG CACTAACGGG CAAGAACAAG TATTCGTTCG ACGTCGACTC CAACGGCAGC
TTTGATCTCT ACTCCGTTGT TTCCATCCCT GCTGGCGGGT TCACACGCGG AAACGTGACC
TCGCGCAACA TGATCGGGCA GCCCAACGAA GGTCGGCCGG ATCTGAGGCC CGATGTCGAC
TGCACCAATG AGACCGGCTT CCTGACCGGC GTGGGCGGCA CGCAGAAGGC CGGCGATGGC
TGTGTAGCCA AAGTCTGGCG CCGCAGTTGG CATCCGGTGG TCTCCCCGCC GTTCTAA
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| Protein sequence | MFVLDNSGSM NFESQDEYSV NNDCKGTEKG CKNKYGWYSN RSSGANTQYY NPSITYSARV
SSDGTKLTNP ILFVDNQASD DSSPSHSAYT TATTATGKAF TYLQCADTDC ASSSTRTETT
INYPPGTGTI NLPAGHKRTD CGKNTATCTA ELERQNIVNW YRWYRTRTLA VSTALGQAMQ
SYENKFRVGY VQYNADGSPA SHIVRGVNYF KDDPANSANN WKTKFYDWIY GISPSGGTPS
HNALTLAANY YAGSETETSS GSALTNPWKN DPTSSAAIDS KDLSCRRAYA IVLSDGAWNA
QTSSGAGTKY ASVQGSTNYS GNPSGNTASL QYNPAGATGS DSSILATKLA ARSLYIPYGD
GGISSNGFAD LAARYFWNTD FSKLANNIPP IDGQHNPTFW QNMTTFTIGW GLTPSGDSGT
SGGLTWEQIN KYKIDWLAGR TVTRPNWADG NTSVDLNSRY TSDTLRVNDF IRAGFAGGGQ
AYSVYSGDDV RRALDNALSS MVGSGNDAGV AVSGNSSEFQ TLENQYKYTT EYQTAENSGD
IKAFQLNANG GYLNVDTSGK PIPAWSANAK MPTLVNRKIF ALSAYDANAP DSAAAKRKEL
NSTTTLTSLP TDFQALLNAD SLQKLDNSFI RYLLGEDPQA DINGTIYRSR KQPIGASVNS
PPVFVGGRID MGYNTYGSVD GKDSYADYKT RKTTLPPTIF AATNNGKVHV LNAAKSDTVL
TGVPAGTELA EFMPKGAMAS QIDLANTNFR FRYTLDGPLV EQDVYDTKSQ TPAGGTAAWR
QLVLGTGGRA GSFMYGLESP MNTGNRTPTK NHFLWELDSK TTGYSDLANV TNNPAAGQLD
DGTWVMLTGS GHYAPSGKKI GLYVVEALTG KLKAFIPLPA GFGTDDTVNG GNRGLGGVVA
VRDTTRRIVA AYAGDANGNL WRFDLRSSKF AVSYGRPLFT TAGGKSQPIY AAPTWQTHPG
DATACTYSTT SQCGAIVVVG TGILLDEDDL ATPATKQAIY GIWDQTPIGG DDKASFGKVA
VTDLVAQTID LTSAKVGTGI ETGKNFYQVS ANPVDWKTKK GWLLNLGVIA YSGAMANGER
VVGDLANLGS SVMITSFLPE DRNLGLESCT ATGSLPNIIY VLDALTGKNK YSFDVDSNGS
FDLYSVVSIP AGGFTRGNVT SRNMIGQPNE GRPDLRPDVD CTNETGFLTG VGGTQKAGDG
CVAKVWRRSW HPVVSPPF
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