Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5176 |
Symbol | |
ID | 7969835 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5496175 |
End bp | 5497740 |
Gene Length | 1566 bp |
Protein Length | 521 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644795770 |
Product | peptidase M48 Ste24p |
Protein accession | YP_002947044 |
Protein GI | 239818134 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGCGCT TGACTCCCTT TGCCACCAAA AAGACTTCCG CCGCGCCCGC TCTGCGGTCG CTCTGCGCTA CCGTTTTAAT AGCCTGCCAG GTGCTGCTGC CGGTACCGGC CCGCGCCCAG ATGCAGGTGC TGCCGGGCCT GGGCGACGGC GGCGAAATGA CCGCCAGCGC CGAGCGCCAG CTGGGCGACC AGATTGCGCG CGAGCTCTAC CGCGACACCG ACTACATCGA CGACCCGGTG ATCGCCGCCT ACGTGCAGGA CATCTGGCAG CGCCTTTTGG CCGCCGCACG CCAGCGCGGC GAGCTCACGC CCGAGCTCGA CGAGCGCTTT GCCTGGACCA TCCTGCTGGG GCGCGACCGC AACATCAATG CCTTTGCGCT GCCGGGCGGC TACCTGGGCC TGAACATGGG GCTGATTGCC ACGGTGGGCA GCCGCGACGA GCTGGCCACG GTGCTCGGGC ACGAGCTGTC GCACGTCACG CAGCGCCACA TCTCGCGCAT CATGAACCAG CAGGGCAGGC AGATGCCGCT GATGCTGGCC GGCCTGATCC TCGGCATGAT CGCGGCCAGC AAGAGCCGCA ACGCCGATGC GGGCCAGGCC GTGATGATGG GCAGCCAGGC GCTGTTCATG CAGAACCAGC TGAGCTTCTC GCGCGACATG GAGCGCGAGG CCGACCGCGT CGGCTTCGGC GTGATGACGC AGGCCGGCTT CGCGCCGCAG GGCGCGGCGG CCATGTTCGA AAAGCTGCAG TACGCCTCGC GCCTGAACGA CAACGGCTCC TACCCCTACC TGCGCAGCCA TCCGCTCACG TCGGAGCGCA TCTCGGACAT GCAGGGGCGC TTCCAGTTCC GCCTCGATAC CGCCCCGGCC ATGCCGCTGG CCATGGACCA CGCCATGATC GCCGCGCGCG CCCGCGTGCT CACGCGGCCG GGCGTCGACG TGCTGCGGCT GTGGGTCGAT GCGGCCTCCA CCGGCGAATT CGCCAAGAGC AGCGCGGCCC AGCAGGCCGG CACGCTCTAC GCGGCCGCGC TGTCGGCCAA GGAACTGCGC GACTTCCGCG CCGCGCGCAC CCTGGCCGAG CGGCTGACCG CGCGCACCGC CGACGACGCC TCCGCCGCCA AACTGGCGCG CTGGCTCCAT GCCGAGATCG AGCTGGCCGG CGGCAACGCG CCCAAGGCCG CAAGCCTGCT CGATGCGAAG TCGAAGGAGC GGCCCGAGAT GCTGCTCGCG GCCGATGCCG CCGTGGCCAC GCGCCAGCCC GCCCCCCTGG TGCCGGTGCT GCGCGACTGG GTGGCCACGA ATCCGCGCGA CGCCACGGCC TGGCGGGCGC TGGCCAACCT GTATGGCGCG CAGAACGATT CGGTGCGCGC GGTGCGCGCC GATGCCGAGG CCAACGTGGC CATCCTCGAC TATCCGGCCG CGCGCGACCG CCTCAAGGCC GCGCAGGAGC TGATGCGCAA GCCCGGCGCG CCGGTGGACC ACTACGAGGC GTCGATCATC GACACCCGCG CGCGGGCCGT GGAAGTATTG GTGAAGCGGC AGGCTGAGGA GCCGCCGCTG AAGTGA
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Protein sequence | MPRLTPFATK KTSAAPALRS LCATVLIACQ VLLPVPARAQ MQVLPGLGDG GEMTASAERQ LGDQIARELY RDTDYIDDPV IAAYVQDIWQ RLLAAARQRG ELTPELDERF AWTILLGRDR NINAFALPGG YLGLNMGLIA TVGSRDELAT VLGHELSHVT QRHISRIMNQ QGRQMPLMLA GLILGMIAAS KSRNADAGQA VMMGSQALFM QNQLSFSRDM EREADRVGFG VMTQAGFAPQ GAAAMFEKLQ YASRLNDNGS YPYLRSHPLT SERISDMQGR FQFRLDTAPA MPLAMDHAMI AARARVLTRP GVDVLRLWVD AASTGEFAKS SAAQQAGTLY AAALSAKELR DFRAARTLAE RLTARTADDA SAAKLARWLH AEIELAGGNA PKAASLLDAK SKERPEMLLA ADAAVATRQP APLVPVLRDW VATNPRDATA WRALANLYGA QNDSVRAVRA DAEANVAILD YPAARDRLKA AQELMRKPGA PVDHYEASII DTRARAVEVL VKRQAEEPPL K
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