| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5172 |
|---|
| Symbol | |
|---|
| ID | 7969831 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5493489 |
|---|
| End bp | 5493953 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644795766 |
|---|
| Product | protein of unknown function DUF1289 |
|---|
| Protein accession | YP_002947040 |
|---|
| Protein GI | 239818130 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3313] Predicted Fe-S protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCCA TTCACATCAC CGACATCGAG GCCGCCATCA ACCATTGGCG GGAGAAGAGC
CCCTCGCCCG ACGGCATCAC GCTGGCGCCC GAGTTGCGCG CGCTGGCCGA GGTCTACGCG
CTCATGGTGT TCCACCACGA GGACGAGGTC GACGAGGTCG GCTTCCCTGA AAAAGCCTGG
GCCGCCTGGC TCGACTGGTA CCACAGCACG CCCGACACCC CCTGCATTGC CATCTGCTCC
ACCAGCCAGG GCGACGACCA GTGCAAGGGC TGCGGGCGCA GCTTCGACGA GGTGCAGCAC
TGGCCTGCCA TGACGCCGGC CGAAAAGCGC GTGACCTGGC GCCGCATCAC CATGGAAGAC
TCGGCCTGGC GCTTCAACAA GTACGCCGAG CGTGCGCGCG AGGCCGAGCC GCCGCAATGG
CCTGACGATC CCGCCGAGCC CCTCGGCCCC GACGACACGC CCTGA
|
|---|
| Protein sequence | MAAIHITDIE AAINHWREKS PSPDGITLAP ELRALAEVYA LMVFHHEDEV DEVGFPEKAW
AAWLDWYHST PDTPCIAICS TSQGDDQCKG CGRSFDEVQH WPAMTPAEKR VTWRRITMED
SAWRFNKYAE RAREAEPPQW PDDPAEPLGP DDTP
|
|---|
| |