Gene Vapar_5170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5170 
Symbol 
ID7969829 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp5492607 
End bp5493167 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content68% 
IMG OID644795764 
ProductYaeQ family protein 
Protein accessionYP_002947038 
Protein GI239818128 
COG category[S] Function unknown 
COG ID[COG4681] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCCTCA AATCCACCAT CTTCAAGGCC GCCCTCGCGG TGGCCGACAT CGACCACGGC 
TACTACGCCG ACCATGCGCT GACCCTGGCG CGCCACCCGA GCGAGACCGA CGAGCGGATG 
ATGATCCGGC TCGTCGCGCT CGCGCTCAAC GCGCACAAGC TGCAGGACGT GTGCAACGGC 
GACGGCACGC TGGCCTTCGG CGCGGGCCTG TCGAACGTGG ACGAGCCCGA TGTCTGGCTG 
CGCGACTTCA CGGGCGAGAC CAAGCTGTGG ATCGAGGTGG GCCAGCCCGA GGACAAGCCC 
GTCATCAAGG CCTGCGGCAA GGCGGACGAG GTGATCGTCT ACTGCTTCAA CCACGCCGCC 
GAGATCTGGT GGCGCGGCAT CGAGAACAAG CTCACGCGGC CGCAGAACCT GCAGGTCTAC 
CGGGTGCCGA CGGAGGCCTC GCAGGCGCTG GCCGCGCTCG CACAGCGCAG CATGCAGCTG 
CAGGCGACGA TCCAGGAGAA CACGCTGACG CTGGGCGACG GCACCCGCAG CATCGACGTC 
GAACTGCTGC GCTGGAAGTA G
 
Protein sequence
MALKSTIFKA ALAVADIDHG YYADHALTLA RHPSETDERM MIRLVALALN AHKLQDVCNG 
DGTLAFGAGL SNVDEPDVWL RDFTGETKLW IEVGQPEDKP VIKACGKADE VIVYCFNHAA 
EIWWRGIENK LTRPQNLQVY RVPTEASQAL AALAQRSMQL QATIQENTLT LGDGTRSIDV 
ELLRWK