| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5157 |
|---|
| Symbol | |
|---|
| ID | 7971528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5472531 |
|---|
| End bp | 5474582 |
|---|
| Gene Length | 2052 bp |
|---|
| Protein Length | 683 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644795751 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_002947025 |
|---|
| Protein GI | 239818115 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.219035 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGAGG CCGCCCTGAC TGTCGCACCG CCGCGATGGG CACTGTCGGC GTTCGCGCGG
CTGCGCTCGC TGTGGCAGCG CTGGTTCCTC TGGCTGATCC TGGCCGTGCT GGTGTCGGCG
CTGCTGGTCA CCGTGGTGTG GCTCGCGGGC CGGCACGAGG TCGAGCAGGT GCAGGCCACG
CTCGACCGCG ACACCGCCGA TGCGGTTTCG GACCTGCGCA TCGGCCTGCA GCGCAACGCC
CAGAGCCTGC GCGCCACCCA GGCCCCGGGC CTGGACCGCA CGCATTGGCC CGAAGCCGCG
GCCTCGCTGC TGCGCGAGCA CCGCGAATGG CTCCGGCTCG AATGGCGCGA CGCCGCGCTG
CGGCCGCTCG AAGCGGTGAA CACGCCCTAC CGCATGCGGC TGATCGCCGA GGACAGCCGC
GGCGCCGACC AGTCGGACGT GGGGCTCGCC TGCGCGGCCG CGCGCAAGCT GGGCGCGCCG
GCCTATTCGC CGAGCCACTA CGTGCCGATC CTCGGCGGGG GCGGCGTCGA GGTGATGGAA
CTGTGCGTGC CGATCGATGC GGGCGGCTTC CTGGTGGCGA GCTACTCGCT GCGCGACACG
CTGATCGAAC TGGTCGGCCC CACGCTCACG CGCGGCCAGG AAGTGGCCTT CACCGAGGCC
GACGGCACGC GCCTGGTGGC GCTCGGCACC TCGCGCCGCA CCGGGACGCG CGTCTTCACC
TCGCAGCAGC TGATCGACCT GCCCGGCGCC GCGCTGATGC TGCGCGTGGA CGGTTGGCGC
GCCGCGCCCG ATCTTTTTCC GAACGTGCTG ACGGCGCTGG TCACGGCGAT TTCGATCGCG
CTGGTGTCGG TGCTGGTGCT GCTGGCGCGC GACACGCGCC GCCGGCTGCG CGCCGAACGC
GACCTGGCCG ATGCGCTGGC CTTCCGCAAG GCGATGGAAG ACTCGGTCAT CACCGGCCTG
CGCGCGCGCG ACCTGCATGG GCGCATCACC TACGTGAACC CCGCGTTCTG CGAAATGGTC
GGCTTCAGCC CCGAAGAGCT GATGGCCAGC AGCGGCGAAG ACATCGAGGC GCCCTACTGG
CCCACCGAGC TGGCGCACGA ATACCAGCAG CGGCAGGCCC GCCGGCTGGC CGGCGGCATG
CCGCCGCGCG AGGGCTTCGA GTCGGTCTTC ATGCGCAAGG ACGGCACGCG CTTTCCGGTG
CTCATCTTCG AGGCCCCGCT GATCAACGCG CATCGCGTGC AGACCGGCTG GATGAGCGCC
TTCATCGACA TCAGCGAACA GCGCCGCATC GAGGAGCTCT CGCGCGCCAG CCAGGAGCGG
CTGCAGGCCA GCGCGCGGCT TGCCACGGTG GGCGAGATGG CCTCGCTGCT GAGCCACGAG
CTCACGCAGC CGCTGGCCGC CATTGCCAGC TATGCGACCG GCTCGCTCAA CATGCTCGGG
CCGCACGCCA AGGGCGAGCA GGCCGAGGTG GCCATGGCGG TGCGGCGCAT TGCCGAGCAG
GCCGACCGCG CCGGCCAGGT GATCCGCAGC GTGCACGACT TCGTGCGCCG CCGCGACCGC
ACGCGCGAGG CGGTGGCGCC GCAGGCGCTG ATCGATGCGG TGCTGCCGCT GGTGCGGCTG
CAGGCGCGCA AGCTCGGCGT GAGCATCGAG GTGGTGCTCG AAGACCGCCT GCCCGCGGCC
GTGTGCGACC GCACGCTGGT CGAGCAGGTG CTGCTGAATC TCGCGCGCAA TGCCATGCAG
GCCATGGACA CGCCGGAACA CCGGGGCGAG CGCGTGCTGC GGCTGCGCGT CTCGCGCGTC
GTCGCGGTCG GCGGCCCGGG CGCGGAGGAC GCCCGCCGCT GGCTGGAGTT TGCCGTGGCC
GACCTGGGCT GCGGCATCAG CGAAGAGGTG GCGGGCCGCC TCTTCACGCC TTTCTTCACC
ACGCGCGCCG ACGGCATGGG CCTGGGCCTG AGCCTGTGCC GCACCGTGGT GGAGCAGCAT
GGCGGGGTGC TGGTGTTCGA GCCCAACCGG CCGCGGGGCA CCGTGTTCCG GTTTACCCTG
CCGAGTACAT GA
|
|---|
| Protein sequence | MQEAALTVAP PRWALSAFAR LRSLWQRWFL WLILAVLVSA LLVTVVWLAG RHEVEQVQAT
LDRDTADAVS DLRIGLQRNA QSLRATQAPG LDRTHWPEAA ASLLREHREW LRLEWRDAAL
RPLEAVNTPY RMRLIAEDSR GADQSDVGLA CAAARKLGAP AYSPSHYVPI LGGGGVEVME
LCVPIDAGGF LVASYSLRDT LIELVGPTLT RGQEVAFTEA DGTRLVALGT SRRTGTRVFT
SQQLIDLPGA ALMLRVDGWR AAPDLFPNVL TALVTAISIA LVSVLVLLAR DTRRRLRAER
DLADALAFRK AMEDSVITGL RARDLHGRIT YVNPAFCEMV GFSPEELMAS SGEDIEAPYW
PTELAHEYQQ RQARRLAGGM PPREGFESVF MRKDGTRFPV LIFEAPLINA HRVQTGWMSA
FIDISEQRRI EELSRASQER LQASARLATV GEMASLLSHE LTQPLAAIAS YATGSLNMLG
PHAKGEQAEV AMAVRRIAEQ ADRAGQVIRS VHDFVRRRDR TREAVAPQAL IDAVLPLVRL
QARKLGVSIE VVLEDRLPAA VCDRTLVEQV LLNLARNAMQ AMDTPEHRGE RVLRLRVSRV
VAVGGPGAED ARRWLEFAVA DLGCGISEEV AGRLFTPFFT TRADGMGLGL SLCRTVVEQH
GGVLVFEPNR PRGTVFRFTL PST
|
|---|
| |