Gene Vapar_5154 details

Gene Information

• Locus tag: Vapar_5154
• ID: 7971525
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 5470535
• End bp: 5471194
• Gene Length: 660 bp
• Protein Length: 219 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644795748
• Product: OmpA/MotB domain protein
• Protein accession: YP_002947022
• Protein GI: 239818112
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAGT TTGTACTCGC CACCACCGCT GCCGCCCTCG TCCTGTCCGG CTGCGCCGGC 
GGCATGACCG ATACCCAGCG CAACACCGGC ATCGGCGCCG GCATCGGCGC GCTCGGCGGC 
GCCGCCATCG GCTCCGCCAC CGGCGGCAAC CGCGGCGCCA TCGGCACGGG TGCCGTGGTC 
GGCGCCGCAG CCGGCGCGCT CGGCGGCTAC CTGTGGTCGC AGCGCATGGA AAACCAGAAG 
CGCCAGATGG AAGCCGCCAC CCAGGGCACC GGCGTGGCCG TGACCCAAAC CCCGAACAAC 
GAGCTCAAGC TGCAGATCCC GAGCGACGTC TCCTTCGACG TGGGCCGCTC CAACATCAAG 
TCCAACTTCG CTCCGGTGCT CGACCAGTTC GCGAGCGGCC TGCGCAACAA CCCGAACGCC 
GAGGTGCGCA TCATCGGCCA CACCGACAAC ACCGGCTCGG ACGCCATCAA CAACCCGCTG 
TCGGTCGACC GCGCCGCCAG CACGCGCGAC TACCTGGTGG CGCGCGGCGT GAGCGCCGCC 
GCCTTCCGCA TCGAAGGCCG CGGCTCGCAC GAACCGATCG CCAACAACAA CAGCGATGCC 
GGCCGGGCGC AGAACCGCCG CGTCGAGATC TACGTGGGCG AGCGCGCGCC GCGGGGCTGA 

 

Protein sequence

MKKFVLATTA AALVLSGCAG GMTDTQRNTG IGAGIGALGG AAIGSATGGN RGAIGTGAVV 
GAAAGALGGY LWSQRMENQK RQMEAATQGT GVAVTQTPNN ELKLQIPSDV SFDVGRSNIK 
SNFAPVLDQF ASGLRNNPNA EVRIIGHTDN TGSDAINNPL SVDRAASTRD YLVARGVSAA 
AFRIEGRGSH EPIANNNSDA GRAQNRRVEI YVGERAPRG