| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5146 |
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| Symbol | |
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| ID | 7971517 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5460106 |
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| End bp | 5461029 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795740 |
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| Product | 3-hydroxyisobutyrate dehydrogenase |
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| Protein accession | YP_002947014 |
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| Protein GI | 239818104 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.74741 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTTCCA ACACCCCAAC ACCCGCCGTC GGCGTCGTGG GCCTCGGCGC CATGGGCAGC
GGCATGGCGC AGTCGCTGCG CCGCGCGGGC TACGAGCCGC ACGTGTTCGA CGTGCGGCTG
GACGTGGCCC ACGCCTTTGC GCGCGACGGC GGCGTGGCCT GCGACACGCT GGCCGCGCTC
GGCGCGCAGT GCGACATCGT GGTTTCCGTG GTGGTCAATG CGGCGCAGAC CGAATCGGTG
TTGTTCGGCG ATGGCACCAC GCCCGGCTGC GCGGCGTCGA TGAAGCCCGG CAGCCTGTTC
GTGATGTGCT CCACCGTCGA CCCGAACTGG TCGGTCGCGC TCGAGGCGCG CCTGGCCGCA
AAGGGCATCC TGTACCTCGA CGCGCCGATC TCCGGCGGCG CCGCCAAGGC CGCGAGCGGC
CAGATGACGA TGATGACCGC GGGCACGCCC GCGGCTTACG AAAAGGCCGG CGCCGTGCTC
GACGCGATGG CGGCCAAGGT TTATCGTCTG GGCGACCGCG CGGGGGCGGG CAGCAAGGTC
AAGGTCATCA ACCAGCTGCT GGCCGGCGTG CACATTGCCG CGGCGGCCGA GGCCATGGCG
CTGGGCCTGC GTGAAGGCGT GGACCCGGCC GCGCTGTACG AGGTCATCAC GCACAGCGCG
GGCAACAGCT GGATGTTCGA GAACCGCATG GCGCACGTGC TGGCGGGCGA CTACACGCCG
CTGTCGGCCG TCGACATCTT CGTGAAGGAC CTGGGCCTGG TGCTCGACGT GGCGCGTGCC
AGCAAGTTTC CGCTGCCGCT GTCGTCCACC GCGCACCAGA TGTTCATGCA GGCCTCCACC
GCGGGCTTCG CGCGCGAGGA CGACAGCGCG GTCATCAAGA TTTTTCCCGG CATCGAACTG
CCGGCTGCCG ACAAGAAAGC CTGA
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| Protein sequence | MTSNTPTPAV GVVGLGAMGS GMAQSLRRAG YEPHVFDVRL DVAHAFARDG GVACDTLAAL
GAQCDIVVSV VVNAAQTESV LFGDGTTPGC AASMKPGSLF VMCSTVDPNW SVALEARLAA
KGILYLDAPI SGGAAKAASG QMTMMTAGTP AAYEKAGAVL DAMAAKVYRL GDRAGAGSKV
KVINQLLAGV HIAAAAEAMA LGLREGVDPA ALYEVITHSA GNSWMFENRM AHVLAGDYTP
LSAVDIFVKD LGLVLDVARA SKFPLPLSST AHQMFMQAST AGFAREDDSA VIKIFPGIEL
PAADKKA
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