| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5144 |
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| Symbol | |
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| ID | 7971515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5457784 |
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| End bp | 5459052 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795738 |
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| Product | type III effector Hrp-dependent outers |
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| Protein accession | YP_002947012 |
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| Protein GI | 239818102 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3395] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAAGT TGCTGCTCGG CTGCATCGCC GACGACTTCA CCGGCGCGAC CGACCTCGCC
AACAACCTCG TGCGCGCCGG CATGCGCGTG GTGCAGGCCA TTGGCGTGCC CGCCACGCCG
CTCGATGCCG ATGTGGATGC CGTCGTCGTC GCGCTCAAGT CGCGCACCAT CGCGCCGGCC
GAGGCCATCG CGCAGTCGCT CGATGCGCTG CGCTGGCTGC AGGCGCAGGG CGCGCAGCAG
ATCTACTTCA AGTACTGCTC CACCTTCGAC AGCACGCCGC AAGGCAACAT CGGCCCGGTG
ACCGAGGCGC TGATGGAGGC GCTGAAGTGC GGCTTCACCA TTGCCACGCC CGCCTTCCCC
GACAACAAGC GCACCGTGTT CAAGGGCTAC CTGTTCGCGG GCGACGTGCT GCTCAATGAG
AGCGGCATGC AGAACCATCC GCTCACGCCG ATGACCGACC CGAACCTGGT TCGCGTGCTG
CAGGCGCAGT GCACGCGCAA GGTCGGGCTG ATCGACCATG CGGTGGTGGC GCGCGGCGCG
GCGGCCGTCA CGGAGCGCAT CGAGCAGCTC CAAGGCGAGG GCGTGTCGGT CGCCATCGTC
GATGCGGTGT CGAACGACGA CCTGCTGCGC CTTGGCCCGG CGCTCGCGAA GATGCCGCTG
GTCACGGCCG GCTCGGGCGT GGCCATCGGG CTGCCGGCCA ACTTCGGCCT CGCGCCGTCG
TCGCAGGCCA GTGCGCTGCC GGCGGCCGGC GGACTGCGCG CCGTGGTGTC GGGCAGCTGC
TCGCTGGCCA CCAACCGGCA GGTGCTCGAC TTCATCCAGC GCGGCGGCGC GGCGCTGGCC
GTGGATCCGC TGCGCATTGC CGCGGGCGCG GAAGTCGCGG CCGAGGCATT GGCCTGGGCC
GCGCCGCTGG TCCAGAAGCA GCCGGTGCTG GTCTATTCCA CGGCCGAGGC TGGCGCCGTC
AAGTCGGTGC AGGGCAAGCT CGGCGTCGAG CAAGCCGGCG CAATGGTCGA GCGCACCATT
GCCGCGATTG CGCGCGGCCT GGTCGAGCGG GGTGTGCGCC AGTTGGTGGT GGCGGGCGGC
GAAACCTCCG GTTCCTGCGT TCAGGCACTG GGCATCGCGC AGATGCAGAT CGGCCCGCAG
ATCGATCCGG GGGTGCCGTG GTGCCATGCG CGCACGGATG TCGAAGGTTT GCCGGTGCAC
ATTGCGCTGA AGTCCGGGAA CTTCGGGGGG GATGACTTCT TCACCAAGGC CTTTACAGTG
CTTGGATGA
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| Protein sequence | MAKLLLGCIA DDFTGATDLA NNLVRAGMRV VQAIGVPATP LDADVDAVVV ALKSRTIAPA
EAIAQSLDAL RWLQAQGAQQ IYFKYCSTFD STPQGNIGPV TEALMEALKC GFTIATPAFP
DNKRTVFKGY LFAGDVLLNE SGMQNHPLTP MTDPNLVRVL QAQCTRKVGL IDHAVVARGA
AAVTERIEQL QGEGVSVAIV DAVSNDDLLR LGPALAKMPL VTAGSGVAIG LPANFGLAPS
SQASALPAAG GLRAVVSGSC SLATNRQVLD FIQRGGAALA VDPLRIAAGA EVAAEALAWA
APLVQKQPVL VYSTAEAGAV KSVQGKLGVE QAGAMVERTI AAIARGLVER GVRQLVVAGG
ETSGSCVQAL GIAQMQIGPQ IDPGVPWCHA RTDVEGLPVH IALKSGNFGG DDFFTKAFTV
LG
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