Gene Vapar_5139 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5139 
Symbol 
ID7971510 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp5453635 
End bp5454306 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content65% 
IMG OID644795733 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002947007 
Protein GI239818097 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCATCG GAGAAGAGGA AAGAGAAAGC GACAGCGAGG CGCCCGCCAC GCGCGGCCGC 
TCGCGCAAGT ACACGCAGGT GCTCGGCCTC ATCAACCAGG CCGCCATCGA GGTGTTCGCA 
AGCGAGGGCC TGGCCGGCGC CTCGACCCAG GCCATTGCCG ACAAGGCCGG GCTCTCGAAG 
GCGCAGCTGC ACTACTACAT CGAGAGCAAG GAAGCGCTCT ACCGGCAGAT CCTGCAGGAC 
ATCCTCAACG ACTGGATCGT GGTGTTCGGC TTTGCCGACG AGGCCTTCGG CCCGCGCAAG 
GTGCTGGGCG ACCTGATCCG CCGCAAGATG GTGTTCTCGT TCGAGCACCC GCTGCGCTCG 
CGCATCTTCA CGGCCGAGAT GATGCGCGGC GCACCGGTGC TCAACGCCAT GATGGACACG 
AGCAAGCAGC GCACCGACCA GGCCGCCGCC GTCATAGAGA ACTGGATGAA CCAGGGCCTG 
ATGGACAAGG CCGACCCGAT GCTGGTGCTG TTCCACATCT GGGCGGTGAC GCAGTTCTAT 
GCCGACCACG CCACGCAGGC GGCCTACTTC CGCAACGTGG CGCAGCAGGG CCAGGACAAG 
GACAGCAAGG ACCGGCGCTA CCTGATCGAG CAGGTGACCG AATTCCTGCT GAAAGGCGCG 
GGCGTCAGGT AG
 
Protein sequence
MSIGEEERES DSEAPATRGR SRKYTQVLGL INQAAIEVFA SEGLAGASTQ AIADKAGLSK 
AQLHYYIESK EALYRQILQD ILNDWIVVFG FADEAFGPRK VLGDLIRRKM VFSFEHPLRS 
RIFTAEMMRG APVLNAMMDT SKQRTDQAAA VIENWMNQGL MDKADPMLVL FHIWAVTQFY 
ADHATQAAYF RNVAQQGQDK DSKDRRYLIE QVTEFLLKGA GVR