Gene Vapar_5127 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5127 
Symbol 
ID7971498 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5441611 
End bp5442315 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content65% 
IMG OID644795721 
Productcytochrome c oxidase subunit III 
Protein accessionYP_002946995 
Protein GI239818085 
COG category[C] Energy production and conversion 
COG ID[COG1845] Heme/copper-type cytochrome/quinol oxidase, subunit 3 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCACA CCGCAACCGC CGCTGCTGCG CCGCTGAACC CGCAGGCCAT CGCCGCCACC 
GGCTGGCGCG GGCTGGTCGC CGACTGGTCC TCCGACCGCC AGGCGTTCCA CGTCTCGTGG
GGCAAGGCGA TGATGTGGAT CTTCCTGCTC AGCGACACCT TCGTCTTCAG CTGCTTCCTG
ACCGGCTACA TGACGGTGCG CGCCTCGACC ACCGTGCCGT GGCCCAACCC GAGCGAGGTG
TTCGCGCTCC ATGTGGGGGG CGCCGACATC CCGCTGCTGC TGATCGCGAT CATGACCTTC
GTGCTCATCA GCAGCAGCGG CACGATGGCG ATGGCCGTCA ATTTCGCCTA CCGCCGCGAC
CGCGTGAACG CCGCCACGCT GATGCTCGTG ACCGCGACCT GCGGCGAAAT CTTCGTCGGC
ATGCAGGCCT TCGAGTGGTC CAAGCTGATC CTCGAGGAGG GCGTGCGGCC CTGGGGCAAC
CCAATGGGCG CGGCGCAGTT CGGCTCGGCC TTCTTCATGA TCACGGGCTT CCATGGGCTG
CACGTGTCGG CCGGCGTGGT CTTCCTGTTC ACCGTGGCCT TCAAGCTGAT GCGCGGCGAC
TACGACAAGT CCGGCAACTA CCAGATCGTC GAGATTGCCG GCCTGTACTG GCACTTCGTG
GACCTGGTGT GGGTGTTCAT CTTTGCGCTG TTCTATCTCT GGTGA
 
Protein sequence
MNHTATAAAA PLNPQAIAAT GWRGLVADWS SDRQAFHVSW GKAMMWIFLL SDTFVFSCFL 
TGYMTVRAST TVPWPNPSEV FALHVGGADI PLLLIAIMTF VLISSSGTMA MAVNFAYRRD
RVNAATLMLV TATCGEIFVG MQAFEWSKLI LEEGVRPWGN PMGAAQFGSA FFMITGFHGL
HVSAGVVFLF TVAFKLMRGD YDKSGNYQIV EIAGLYWHFV DLVWVFIFAL FYLW