| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5125 |
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| Symbol | |
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| ID | 7971496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5439633 |
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| End bp | 5441261 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795719 |
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| Product | protein of unknown function DUF894 DitE |
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| Protein accession | YP_002946993 |
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| Protein GI | 239818083 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCCGA TTTCGCCCGA AGAAACACCC ATTCCCCCCA TCCGGCCGCA GCCGCCGAAG
TTCGCGGCGC TCGAGCCGCT CAAGCTGCCC GTGTTCCGCA TGCTGTGGAG CACCTGGCTC
ATCGCCAACA TCTGCATGTG GATGAACGAC GTGGCGGCGG CGTGGATGAT GACCTCGCTG
ACCACCTCGC CGATCTGGGT GGCGCTGGTG CAGTCGGCCT CCACCCTGCC GGTGTTCCTG
CTGGGCCTGC CCAGCGGCGC GCTGGCCGAC ATCCTGGACC GCCGGCGCTG GCTGGTGGCC
ACGCAGTTCT GGCTCGCGGG CACGGCCATC GTGCTGTGCG CGGCCATTGC CATGGACCTG
ATGACCGCGC CGCTCTTGCT GGCGCTCACC TTCGCCAACG GCATCGGGCT GGCGCTGCGC
TGGCCGGTGT TCTCGGCCAT CGTGCCCGAG CTGGTGCCGC GGCCGCAATT GCCGGCGGCG
CTGGGCCTGA ACGGCATTGC GATGAACGCC TCGCGCATCA TCGGCCCGCT CACGGCCGGC
ATGCTGATCG CCAGCGCGGG CAGCGTCTGG GTGTTTGCGC TCAACGCGGT GCTGTCGGTG
GCCTCGGGCT TCGTGGTGCT GCGCTGGCGG CGCGAGCACA CGCCCAATCC GCTGGGCCGC
GAGAAGCTCA TCAGCGCGAT GCGCGTGGGC GTGCAGTTCG TCTGGCAATC GCAGCGCATG
CGCGCGGTGC TCTCGCGCAT CACCATCTTC TTCTTCCACT CCACCGCGCT GCTCGCGCTG
CTGCCGCTCT TGGCACGCAA CCTCAAGGGC GGCGGCGCGG CCACCTTCAC GCTGCTGCTC
GCCGCCATGG GCGCGGGCGC GATCATCGCG GTGCTGTTCC TGCCGCGGCT GCGCCAGGCG
CTCGGGCGCG ACCAGCTGGT GCTGCGCGGA ACGGTGCTGC AGTCGCTCGC CACCGCGGTG
ATGGCCTTCG CACCCAACGC CTGGGTGGCG GTGCCCGCGA TGTTCTTCGG CGGCATGGCG
TGGATCACGG TGGCCAACTC GCTCTCGGTC TCGGCGCAGC TCGCGCTGCC CGACTGGGTG
CGCGCGCGCG GCATGTCGAC CTACCAGATG GCGATCATGG GCGCGAGCGC GATCGGCGCG
GCGCTCTGGG GCCAGGTGGC CACCGTCACC GACCTGCGCT CCAGCCTCGA GGTCGCCGCC
GTGAGCGGCA CCCTGCTGAT GCTGGCGGCG CTGCGCTGGG TCACCGACGT CTCGGGCGAG
GAAGCCGACA TGAGCCCGGC GCGGGCCGGC TGGGCCGCGG GCCCGCCGGC GGAAACGCCG
GAAGAAAACG GCCGCGTGGT CATCACCATC GAATACATGA TCGACCCCGC GCGCGCGGCC
GCCTTCCACC TGGTGATGCA CCAGACCCGG CGCGCGCGCC TGGGCCAGGG CGCCATCGGC
TGGGAGCTGC TGCACGACAT CGCGGAGCCG GGCCGCTACC TGGAAGAGAT CGTGGACGAA
AGCTGGACCG ACCACCTGCG CCGCTTCAAC CGCGCCACGG CCGCCGACAT GGCGCTGCGC
GAGCGGCGGC TGGCCTTCCA CATCGGCGAA TCGCCGCCGG TGGTGACGCG CTACGTGGTG
AAGCGCTGA
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| Protein sequence | MPPISPEETP IPPIRPQPPK FAALEPLKLP VFRMLWSTWL IANICMWMND VAAAWMMTSL
TTSPIWVALV QSASTLPVFL LGLPSGALAD ILDRRRWLVA TQFWLAGTAI VLCAAIAMDL
MTAPLLLALT FANGIGLALR WPVFSAIVPE LVPRPQLPAA LGLNGIAMNA SRIIGPLTAG
MLIASAGSVW VFALNAVLSV ASGFVVLRWR REHTPNPLGR EKLISAMRVG VQFVWQSQRM
RAVLSRITIF FFHSTALLAL LPLLARNLKG GGAATFTLLL AAMGAGAIIA VLFLPRLRQA
LGRDQLVLRG TVLQSLATAV MAFAPNAWVA VPAMFFGGMA WITVANSLSV SAQLALPDWV
RARGMSTYQM AIMGASAIGA ALWGQVATVT DLRSSLEVAA VSGTLLMLAA LRWVTDVSGE
EADMSPARAG WAAGPPAETP EENGRVVITI EYMIDPARAA AFHLVMHQTR RARLGQGAIG
WELLHDIAEP GRYLEEIVDE SWTDHLRRFN RATAADMALR ERRLAFHIGE SPPVVTRYVV
KR
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