| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5123 |
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| Symbol | |
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| ID | 7971494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5438056 |
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| End bp | 5438814 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644795717 |
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| Product | extracellular solute-binding protein family 3 |
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| Protein accession | YP_002946991 |
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| Protein GI | 239818081 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.815904 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTCCA TCCGCCGCGC CCTGGCGCTC GGCCTTGCCG CCGCCACGCT CGCCTTCGGC
GCCCAGGCCC AGAACCGCGA ACTCATCGTG GCCTCCAGCG CCACCTACGC GCCCTTCGCC
TTCGAGAACA AGGACAAGCA GATCGTCGGC TTCGACATCG ACATCATCAA CGCCATTGCC
AGGCAGCAAG GCCTGAAGAT CAAGGTGGTC AACACGCCGT TCACCGGCAT CTTCGGCGCG
CTCAACAACG GCGACGTCGA CCTCGTGATC TCGGGCGTCA CCATCAACGA GAAGCGCAAG
CAGAGCTACG ACTTCACGCC GCCCTACTTC GCGGCGCGCC AGCTGATCGC GCTGCCCAAG
GGCAGCACGG TGGCCTCGCT GAAGGACCTG GCGGGCAAGA AGATTGCCGT GGTGAGCGCC
TCCACGGCCG ACGACATCGC CTCGCGCGAG TTCGGCAAGA CCAGCCCCAA CATCCGCCGC
TTCGAGAGCA CGCCGCTCAT CATTTCCGAG CTGGCCGGCG GCGGCGTCGA TGCCGCCATG
GGCGACAACG GCGTGATCGC CTACCGCGTG GCGCAGAACC CCGAGCTCAA GACGCTCGAC
GACAAATCCT TTCCCGAGGA AGGCTTCGGC ATCGTCGTGA AGAAGGGCGA CAAGGCGCTG
CTCGACAAGC TCACGGCCGG CCTGGCCGCG ATCCGCGCGG ACGGCAGCTA CGCCGCCATC
TACAAGAAGT GGTTCAACAA GGACCCGAAC GCCCGATGA
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| Protein sequence | MNSIRRALAL GLAAATLAFG AQAQNRELIV ASSATYAPFA FENKDKQIVG FDIDIINAIA
RQQGLKIKVV NTPFTGIFGA LNNGDVDLVI SGVTINEKRK QSYDFTPPYF AARQLIALPK
GSTVASLKDL AGKKIAVVSA STADDIASRE FGKTSPNIRR FESTPLIISE LAGGGVDAAM
GDNGVIAYRV AQNPELKTLD DKSFPEEGFG IVVKKGDKAL LDKLTAGLAA IRADGSYAAI
YKKWFNKDPN AR
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