Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5119 |
Symbol | secD |
ID | 7971490 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5431133 |
End bp | 5433016 |
Gene Length | 1884 bp |
Protein Length | 627 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644795713 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_002946987 |
Protein GI | 239818077 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCGTT ATCCGGTCTG GAAGTACGCG ATCATCGTGA TCGTGCTGCT TGTGGGGTTG ATCTATTCCC TGCCGAACTT CTTCGGCGAG GCGCCTGCCG TGCAGGTGTC CGCGGCCAAG TCCACCGTCA AGGTCGACGC GGCCACCCAG AGCCGGGTCG AGGAGGCGCT CAAGGCAGCC GGGCTCGCGC CCGACCTGCT CACGCTCGAG GGCGGCTCGC TGCGCGCGCG CTTCGCCACG CCCGACGAGC AGCTCAAGGC GCGCGACACG CTGCAGCGCA CGCTGGTGCC CGATCCGGCC GATCCGCCCT ACGTGGTGGC GCTGAACCTG GTCTCGCGCT CGCCGGCCTG GCTCACGGCG CTGCATGCGT TCCCGATGTA CCTGGGCCTG GACCTGCGCG GCGGCGTCGA CTTCCTGCTG CAGGTCGACA TGAAGGGCGC CATCGACAAG AAGGCCGAAT CCTTCGCGAG CGACCTGCGC ACCACCTTCC GCGACAAGGG CATCCGCGGC ACCTCGGTGA ACCGCAACGG CCAGGCCATC GAGGTCTCGT TCCGCGACGC GGCCGCGCTC GAAGCGGCCA AGCGCCTGAT CCAGGACCAG TTCCAGGACC TCGCCACCAC CGACAGCCAG GACGGCAGCA ACTGGCGCCT GGTGGCCACC ATCAAGCCCG AAGCCGCGCG CCGGCTGCAG GACGCGGCGC TCAAGCAGAA CATCACCACG CTGCACAACC GGATCAACGA ACTCGGCGTG GCCGAGCCGG TGATCCAGCA GCAGGGCCTG GACCGCATCG TGGTGCAGCT GCCCGGCGTG CAGGACACGG CCAAGGCCAA GGACATCCTG GGGCGCACCG CCACGCTCGA GATGCGCCTG GTCGACGAAA GCGCCGAAGG CCGCGCGGCC GAACTGAGCG GCGGGCCGGT GCCCTTCGGC TCCGAGAAAT TCCTCGAGCG CAACGGCCGC CCCGTGATCG TGAAGAAGCA GGTGCTGGTC ACCGGCGAGA ACCTCACCGA CGCGCAGCCC GGCTTCGACC AGCAGAGCAA CCAGCCCAAG GTCGACCTGA CCATGGACGC CAAGGGCGGC CGCATCATGC GCGACGTGAG CCGCGAGAAC TACAAGAAGC GCATGGCCAT GCTGATCTTC GAGAAGGGCA AGGGCGAAGT GCTCACGGCT CCGTCGATCA ACGGCGAACT CGGCAACCGC TTCCAGATTT CCGGCTCGAT GACCGTGGCC GAGGCCGCCG ACCTCGCGCT GCTGCTGCGC GCCGGCTCGC TGGCCGCGCC GATGGAGATC ATCCAGGAAC GCACCATCGG CCCGAGCCTG GGCGCCGACA ACATCGAGAA GGGCTTCAAG AGCGTGATGT ATGGCTTCTT GGCCATCATG GTGTTCATGT GCGCCTACTA CGCGCTGTTC GGCCTGTTCT CGTCGATCGC GCTGGCCGTC AACCTGATGC TGCTGGTGGC CATTCTCTCG ATGCTGCAGG CTACGCTCAC GCTGCCCGGC ATCGCGGCCA TGGCGCTGGC CATCGGCGTG GCCATCGACT CCAACGTGCT GATCAACGAG CGCGTGCGCG AGGAGCTGCG CAACGGCGCC TCGCCGCAGG CGGCCATCCA CGCCGGCTAC GACCGCGCCT GGGGCACGAT CCTCGACTCC AACGTGACCA CGCTGATCGC GGGCATCGCG CTGCTGGCCT TCGGCTCGGG CCCGGTGCGC GGCTTCGCGG TGGTGCACTG CATCGGCATC GTCACCTCGA TGTTCTCCGC CGTGTTCTTC TCGCGCGGCC TCGTGAACTT CTGGTACGGC CAGAAGAAGA AGCTCAAGAC GGTGTCGATC GGCACGGTCT GGCGCCCCAA GACCGACGGC ACTGCCGTGG CTGAAGGCAA GTAA
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Protein sequence | MNRYPVWKYA IIVIVLLVGL IYSLPNFFGE APAVQVSAAK STVKVDAATQ SRVEEALKAA GLAPDLLTLE GGSLRARFAT PDEQLKARDT LQRTLVPDPA DPPYVVALNL VSRSPAWLTA LHAFPMYLGL DLRGGVDFLL QVDMKGAIDK KAESFASDLR TTFRDKGIRG TSVNRNGQAI EVSFRDAAAL EAAKRLIQDQ FQDLATTDSQ DGSNWRLVAT IKPEAARRLQ DAALKQNITT LHNRINELGV AEPVIQQQGL DRIVVQLPGV QDTAKAKDIL GRTATLEMRL VDESAEGRAA ELSGGPVPFG SEKFLERNGR PVIVKKQVLV TGENLTDAQP GFDQQSNQPK VDLTMDAKGG RIMRDVSREN YKKRMAMLIF EKGKGEVLTA PSINGELGNR FQISGSMTVA EAADLALLLR AGSLAAPMEI IQERTIGPSL GADNIEKGFK SVMYGFLAIM VFMCAYYALF GLFSSIALAV NLMLLVAILS MLQATLTLPG IAAMALAIGV AIDSNVLINE RVREELRNGA SPQAAIHAGY DRAWGTILDS NVTTLIAGIA LLAFGSGPVR GFAVVHCIGI VTSMFSAVFF SRGLVNFWYG QKKKLKTVSI GTVWRPKTDG TAVAEGK
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