| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5118 |
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| Symbol | secF |
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| ID | 7971489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5430155 |
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| End bp | 5431114 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644795712 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_002946986 |
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| Protein GI | 239818076 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATTCT TCCGCATCCA CAAGACCATC CCGTTCATGC GCCACGCGCT GGTGCTGAAC
ATCGTCTCCT TCGTCACCTT CGCGCTGGCG GTGTTCTTCC TGCTGCACCG CGGGCTGCAC
CTGTCGGTGG AGTTCACGGG CGGCACCGTG ATGGAGGTGG CCTACCAGCA GTCCGCCGAC
ATCGGCAAGG TGCGCGAGGC CATCGGCAAG CTCGGCTACC CCGACGTGCA GGTGCAGAGC
TACGGCACCT CGCGCGACGT GCAGATCCGC CTGCCGGCGC AAAAGGGCAT GAGCTCCGAC
CAGCAGAGCG CGCAGGTCAT GCAGGCGCTC AAGTCGGTCG ATCCCTCGGC CACGCAGCGC
GGCATCGAGG TGGTCGGCCC GCAGGTCGGC GAGGAGCTCA CCACCAACGG GCTCAAGGCG
CTCGGCATGG TGGTGGTGGG CATCATGATC TACCTGGCCA TCCGCTTCGA ATGGAAGTTT
GCGCTTGCCA CCGTGCTCGC CAACCTGCAC GACGTGGTCA TCATCCTGGG CTTCTTCGCC
TTCTTCCAGT GGGAGTTCTC GCTCGCGGTG CTGGCGGCGG TGCTGGCGGT GCTGGGCTAC
TCGGTCAACG AGTCGGTCGT GATCTTCGAC CGGGTGCGCG AGAATTTCCG GCGCTACCGC
AAGATGAACA CCGTCGAGAT CATCGACAAC GCAATCACCT CGACCATCAG CCGGACCATC
ATCACCCACG GCTCGACGCA GCTGGTGGTG CTATCGATGT TCTTCTTCGG CGGCCCGACG
CTGCATTACT TTGCGCTGGC GCTGACCATC GGCATCTGCT TTGGCATCTA CTCGTCCTGC
TTCGTGGCGG CGGCCATTGC CATGTGGCTG GGCATCAAGC GCGAAGACCT GATCAAGGGC
GGCCCGGCCA AGCGCGACGG CGGCTCCGAG GACGACCCGA ACGCCGGCGC CGTGGTCTGA
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| Protein sequence | MEFFRIHKTI PFMRHALVLN IVSFVTFALA VFFLLHRGLH LSVEFTGGTV MEVAYQQSAD
IGKVREAIGK LGYPDVQVQS YGTSRDVQIR LPAQKGMSSD QQSAQVMQAL KSVDPSATQR
GIEVVGPQVG EELTTNGLKA LGMVVVGIMI YLAIRFEWKF ALATVLANLH DVVIILGFFA
FFQWEFSLAV LAAVLAVLGY SVNESVVIFD RVRENFRRYR KMNTVEIIDN AITSTISRTI
ITHGSTQLVV LSMFFFGGPT LHYFALALTI GICFGIYSSC FVAAAIAMWL GIKREDLIKG
GPAKRDGGSE DDPNAGAVV
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