Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5107 |
Symbol | |
ID | 7971478 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 5419359 |
End bp | 5420324 |
Gene Length | 966 bp |
Protein Length | 321 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644795701 |
Product | beta-lactamase domain protein |
Protein accession | YP_002946975 |
Protein GI | 239818065 |
COG category | [R] General function prediction only |
COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.065858 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGCCA ACGTCTCCTT TGCCTCGGCG TCCGACACGC GCGAGCAGAA GCCGCAGCTG CGCGAACTCG CACCCGACGT GTACGGCTAC ATCAGCGACT TCGATCCCAA CTGCGGCTTC GTCGTCGGTG ACGAGCAGGT GGTGCTGATC GACACGCGCC CCACGCCGCG CATGGCGCGC GACTTTCTCG CGGCCATCCG CAAGGTGACC GACAAACCGA TCAAGACCAT CGTGCTCACG CACTACCACG CGGTGCGCGT GATGGGCGCG AGCGCTTTCG GCGAGGTCGA GGCCATCATC GCGAGCAACG GCACGCTCGA CTGGATCCGC ACGCGCGGCC AGGCGGATTT CGACTCGGAA GTCGGCCGCT TTCCGCGCCT CTTCGCGGGC GTGGAAGAGA TTCCAGGCCT GACCTTTCCG ACGCAGAGCT TCGAGCGCGA GATGACGCTG CGGCTCGGCG GCAGCCGCGA ACTGCATCTG AGAGCCCTGG GCCGCGGCCA TTCGAGCGGC GACACGGTCG CGTGGCTGCC CGACTGCGGC GTGCTGTTCT CGGGCGACGT GGTCGAAAAC CGCTGCGGCG TCTATGCCGG CGACGCGTAC ATCGGCGACT GGGCCGGCAC GCTCGATGCG GTGCGGGCCC TGAAGCCGCG CGTGCTGGTG CCGGGCCGCG GCGCCGTGCT GCGGGGCGAG GCCGAATGCG CCGAGGCCAT CGGACTCACC CAGGCCTTTC TCCAGGCCTT GCTCGACAGC GTGAAGGCCG GCATGGCCGC GGGCGAAACG CTCAAGGGCT GCTTCGCGCG CGCCGAAGCG GCAATGACGC CGCGCTTCGG CAGCTGGCCC GTGTTCCAGC ACGTGCTGCC CTTCGACGTC TCGCGCGCGT ACGACGAACT GCGCGGCATC GAACACCCCG TGGTGTGGAC CGCGCAGCGC GACCGCGAAC TGTGGCAGAC GCTGCGCGGC GAATGA
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Protein sequence | MTANVSFASA SDTREQKPQL RELAPDVYGY ISDFDPNCGF VVGDEQVVLI DTRPTPRMAR DFLAAIRKVT DKPIKTIVLT HYHAVRVMGA SAFGEVEAII ASNGTLDWIR TRGQADFDSE VGRFPRLFAG VEEIPGLTFP TQSFEREMTL RLGGSRELHL RALGRGHSSG DTVAWLPDCG VLFSGDVVEN RCGVYAGDAY IGDWAGTLDA VRALKPRVLV PGRGAVLRGE AECAEAIGLT QAFLQALLDS VKAGMAAGET LKGCFARAEA AMTPRFGSWP VFQHVLPFDV SRAYDELRGI EHPVVWTAQR DRELWQTLRG E
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