| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5089 |
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| Symbol | |
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| ID | 7971460 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5400681 |
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| End bp | 5402114 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795683 |
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| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
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| Protein accession | YP_002946957 |
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| Protein GI | 239818047 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTCTTC GTCGTCTCTC CTTCTTCCTG CGCACCGCCT GCGCGCTTTC CTTCACCGCC
CTGTCCATTC CGGGCGCGCT TGCACAGCAG GTCTTTCCAG GCGAAGTGGA GGCGGCCCTC
GCGCGCGCCA AGGTGCCGCG TGATTCGGTG ACGATGCTGG TGGCCGATGC CGACGGCCTG
CGCCCGCCGC GCCTGGCCTG GCGCACGCAG GTGCCGGTGA ACCCGGCGTC GATCATGAAG
CTGGTCACCA CCTATGCCGC GCTCGACCTG CTCGGGCCGG CCTACAGCTG GAGCACGCCG
GTCTATGCCG ACGGCACGGT GAGCAACGGC GTGCTCAACG GCAACCTCTA CATCAAGGGC
CAGGGCGATC CCAAGCTGGT GCTGGAGCGC GCCTGGCTGC TGCTGCGGCG CGTGCAGGGC
CTGGGCATCA CCAGCGTGAG CGGCGACATC GTGCTGGACC GCAGCGCCTT CGACGGCGCG
ATCGAGAACG ACCCCGCCGC CTTCGACGGC GAGCCGCTGC GGCCCTACAA CGCCTCGCCC
GAGGCGCTGC TGGTCAACTT CAAGTCGGTC AACATGGTCT TCACGCCCGA ACGCGGCGGC
CAGCAGGCGC GCGTGAGCTA CGAGCCGCCG CTCGCCAGCG TGTCGATGCA GCCCACGGTG
GCGCTCGCGC CCGGCGAATG CGGCGACTGG CGCGCGGCCA TCAAGCCCGA CTTCAGCGAC
CCGAACCGCA TCCGCTTCCT GGGCGCCCTG CCGGCCGCCT GCGGCGAGAA GAGCTGGGCC
GTGGCCTATG CCGACCCGCG CACCTACGGC CTGCGCGCCA TCGGCGGCAT GTGGGCCGAG
ATGGGCGGCC GGGTCGGCGG CCAGATGCGC GACGGCCGCG TGCCGGCCGG GCTCAGGCCG
GCGTTCGAGT TCGGCTCGCC GCCGCTTTCG GAGGTGGTGC GCGACATCAA CAAGTACAGC
AACAACGTGA TGGCGCAGCA GCTGTTCCTC ACGCTCGGCC TCACGCAGAA GAACCGCGGC
AGCTTCGAGG CCTCGCGCAG CGCGCTGGGC CAGTGGTGGC GCGAGCGCAT CGGCACCGGC
GAGGCGCCGC CGGTGTTCGA CAACGGCTCG GGCCTGTCGC GCGACGAGCG CATCAGCGCC
GCGGCGCTCG GCCGCATGCT GCAGGTGGCC TGGCGCTCGC CGCTGATGCC GGAGCTGGTG
TCCTCGCTGC CCGCCATGGG GGTGGACGGC ACGCTCAGGA AGCGCACGCT GCGCTCGGGC
GGCGCGGCCC ACCTGAAGAC CGGCTCGCTG CGCGATGCGG CCGGCGTGGC CGGCTATGTG
CACGGCGCAA GCGGCCGCCG CTATGTGCTG GTGGCGATTG CCAACGGCGA GAACGCGGGA
GCCGCGCGCG CCGCGTTCGA TGCGCTGGTC GATTGGGCGT CGCAGGACAA CTGA
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| Protein sequence | MRLRRLSFFL RTACALSFTA LSIPGALAQQ VFPGEVEAAL ARAKVPRDSV TMLVADADGL
RPPRLAWRTQ VPVNPASIMK LVTTYAALDL LGPAYSWSTP VYADGTVSNG VLNGNLYIKG
QGDPKLVLER AWLLLRRVQG LGITSVSGDI VLDRSAFDGA IENDPAAFDG EPLRPYNASP
EALLVNFKSV NMVFTPERGG QQARVSYEPP LASVSMQPTV ALAPGECGDW RAAIKPDFSD
PNRIRFLGAL PAACGEKSWA VAYADPRTYG LRAIGGMWAE MGGRVGGQMR DGRVPAGLRP
AFEFGSPPLS EVVRDINKYS NNVMAQQLFL TLGLTQKNRG SFEASRSALG QWWRERIGTG
EAPPVFDNGS GLSRDERISA AALGRMLQVA WRSPLMPELV SSLPAMGVDG TLRKRTLRSG
GAAHLKTGSL RDAAGVAGYV HGASGRRYVL VAIANGENAG AARAAFDALV DWASQDN
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