Gene Vapar_5088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5088 
Symbol 
ID7971459 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp5400070 
End bp5400672 
Gene Length603 bp 
Protein Length200 aa 
Translation table11 
GC content66% 
IMG OID644795682 
ProductNUDIX hydrolase 
Protein accessionYP_002946956 
Protein GI239818046 
COG category 
COG ID 
TIGRFAM ID[TIGR00052] nudix-type nucleoside diphosphatase, YffH/AdpP family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCGCC CCATGACGAC CCTCCACGAC CGCGTCCGGG TGCACGAAGT CACCCTGCTT 
TCCGACAACT GGTACACGCT CAAGACCACT GCCTTCGACT GGCGGCGCAA CGACGGCCAG 
TGGCAGCGCA TGCACCGCGA GACCTACGAC CGCGGCAATG GCGCCACGCT GCTGCCCTTC 
AACCTCGCCC AGCGCACGGT GCTGCTGACG CGGCAGTTCC GCTACCCAGC CTTCGTCAAC 
GGCCACGACG ACCTGCTGAT CGAGGCGGCC GCCGGCCTGC TCGACAACGC GGCACCCGAG 
GCGCGCATCC GTGCCGAGGT GGAAGAAGAA CTGGGCTATC GCCTGGGCGC GGTGCAGAAG 
GTCTTCGAAG CCTTCATGAG CCCGGGTTCG GTGACCGAGA AGCTGCACTT CTTCATCGCC 
GAATACGAGC CGTCGATGCG CATCGGCGAC GGCGGCGGCT TGGCCGAGGA GGGCGAGGAC 
ATCGAGGTGC TCGAGCTCGG CATCGACGAG GCGCTGGCCA TGGTGGCCGA CGGGCGCATC 
GCCGACGCCA AGACCCTGAT GCTGCTGTAT CACGCGCAAC TGCATGTTTT TCCGCCGAGA 
TAA
 
Protein sequence
MLRPMTTLHD RVRVHEVTLL SDNWYTLKTT AFDWRRNDGQ WQRMHRETYD RGNGATLLPF 
NLAQRTVLLT RQFRYPAFVN GHDDLLIEAA AGLLDNAAPE ARIRAEVEEE LGYRLGAVQK 
VFEAFMSPGS VTEKLHFFIA EYEPSMRIGD GGGLAEEGED IEVLELGIDE ALAMVADGRI 
ADAKTLMLLY HAQLHVFPPR