| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5087 |
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| Symbol | |
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| ID | 7971458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5399238 |
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| End bp | 5400002 |
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| Gene Length | 765 bp |
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| Protein Length | 254 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644795681 |
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| Product | transcriptional regulator, DeoR family |
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| Protein accession | YP_002946955 |
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| Protein GI | 239818045 |
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| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
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| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCACCC GCCAGCGCAA GCAACACATC CTCTCGGTCC TGCAGCGCGA CGGCAACGTC
GTGGCCAAGT CGCTCAGCGA GGAGCTGGCG CTGTCGGAAG ACACCATCCG CCGCGACCTG
CGCGAGCTGG CCGCCGAGGG GCTGCTGCAG CGTGTGCACG GCGGCGCGCT GCCGGTCGCC
AGGGCCGAAG CCGACTTCGC GGGCCGGCTG CAGCTCGCAA CCGCGGAGAA GGTGGCGATC
GGCCGCGCCG CGGCACGGCT GGTGCGGCCG GGGCAGGTGG TCTTCATCGA CGGCGGCACC
ACGGCCGTGC AGATGGCGCG GCACCTGCCG GCCGGCCTGC GCGCCACCGT GGTCACGCAC
AGCCCGTCGG TGGCGGTCGA GCTGGCGGGC CATGCCGGCA TCGAGGTGGT GCTGATCGGC
GGGCGCCTGT TCAGGCATTC GATGGTGGCG GTGGGCGCCG CGGCCATGGA CGCCATCTCG
CGCGTCCACG CCGACACCTG CTTCCTGGGC GTGACGGGGG TACATGCCGA GGCGGGCCTC
ACCACCGGCG ACGTCGAGGA GGCCGCGATC AAGCGCGCGC TCATGGCCGC CGCGGCCGAG
ACGGTGGTGC TGGCCTCGTC GGAAAAGATC GGCGCGGCCT CGGCCTGGGT CATCCACCCC
GTGTCGGCCG CCACCAGCCT GCTGGTGTCG CCGGAAGCGC CTGCCGCCGC GCTGGCGCCG
CTGCGCAAGG CCGGGCTCGC CATCCTGCGC AGCGACGGCG GCTGA
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| Protein sequence | MLTRQRKQHI LSVLQRDGNV VAKSLSEELA LSEDTIRRDL RELAAEGLLQ RVHGGALPVA
RAEADFAGRL QLATAEKVAI GRAAARLVRP GQVVFIDGGT TAVQMARHLP AGLRATVVTH
SPSVAVELAG HAGIEVVLIG GRLFRHSMVA VGAAAMDAIS RVHADTCFLG VTGVHAEAGL
TTGDVEEAAI KRALMAAAAE TVVLASSEKI GAASAWVIHP VSAATSLLVS PEAPAAALAP
LRKAGLAILR SDGG
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