| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5083 |
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| Symbol | |
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| ID | 7974202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5396055 |
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| End bp | 5396837 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 644795677 |
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| Product | Uracil-DNA glycosylase superfamily |
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| Protein accession | YP_002946951 |
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| Protein GI | 239818041 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1573] Uracil-DNA glycosylase |
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| TIGRFAM ID | [TIGR00758] uracil-DNA glycosylase, family 4 |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCGG TACAGACACT GAAGCTCGAC GCCCGCCGGC GCGCGATGCT CGACGAGATG
GGCGTGAAGG TCTGGTGGCC GATGCCTGAA GCTGCCGAAG CGGCGCCCGC GGCTGTGGAA
GCGGCTGCGG TGGCCGCGCC GACGCCCGCC GTCCGCGAGC GCGCGCCCTC CGTGGCCGAG
GTGCCGGCCG CCCCGGCCGC AAGGCCCGCT GCAGCACCGG CCCCGGCGGC GCGCCCCACC
GCGCCCGCGC TGCTCGCGCA GGGCGCCGCC GTGCTGGTCG ATGCGCCCCG CCGCCTCTAC
GCCGAGGCCG CCGCCGAAGC GGCGCAAGGC GGCTGGCTGG TGGTGGCCGA CATGCCGCCC
GAAGCCGACG GCCGCCACGG CGAGCCTTTT GCGGGCGATG CCGGCAAGCT GCTCGACAAC
ATGCTGCGCG CCCTCAAGCT GCACGACGGC ACGACGCCGG TGCACCTGAT GCGCACGCAC
CGCGGCGTGG GCGCCGGCCA GCCCGGCAGC CCGCGTCCGA TGGACGAGGC TTTTGCGGAA
CATGCTGCCG CGCTGGCGCC GAGCCTGGTG CTCGCCATGG GCCCGCTGGC CGCTCAGAGC
CTGATGCAAA GCGCCGATCC GCTCGGCAAG CTGCGCGGCC GCGCGGTGCC GCTGCCCTCG
GACAGCGGCG TGCCGGTGGT GGCCACCTAC CACCCCGCGT ACCTGCTGCG AAACCCGGCC
GACAAGGCCC GCGCCTGGGC CGATCTGTGC CTGGCGGCCG AGCAGCAAAC ACCGTCGAAC
TAG
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| Protein sequence | MNAVQTLKLD ARRRAMLDEM GVKVWWPMPE AAEAAPAAVE AAAVAAPTPA VRERAPSVAE
VPAAPAARPA AAPAPAARPT APALLAQGAA VLVDAPRRLY AEAAAEAAQG GWLVVADMPP
EADGRHGEPF AGDAGKLLDN MLRALKLHDG TTPVHLMRTH RGVGAGQPGS PRPMDEAFAE
HAAALAPSLV LAMGPLAAQS LMQSADPLGK LRGRAVPLPS DSGVPVVATY HPAYLLRNPA
DKARAWADLC LAAEQQTPSN
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