Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5082 |
Symbol | pyrF |
ID | 7974201 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5395197 |
End bp | 5396021 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644795676 |
Product | orotidine 5'-phosphate decarboxylase |
Protein accession | YP_002946950 |
Protein GI | 239818040 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
TIGRFAM ID | [TIGR02127] orotidine 5'-phosphate decarboxylase, subfamily 2 |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTTTCC TCGACAAGCT GGCCACCGCA CAGCAAACAA ACGGTTCGTT GCTCTGCGTG GGGCTCGATC CGGAGCCAGC CAAGTTCCCG GGGCAGCTCA AGGGCGACGC CAGCCGCATC TATGACTTCT GCGCGCGCAT CGTCGACGCG ACGGCCGGCC TGGTCATCGC CTTCAAGCCG CAGATCGCCT ATTTCGCGGC CCACCGCGCC GAAGCCCAGC TCGAACAACT GATGGAGCAC ATGCGCCGCA ACGCGCCCGG CGTGCCCGTG ATCCTGGACG CCAAGCGCGG CGACATTGGC TCCACGGCCG AGCAGTACGC CATCGAGGCC TTCGAGCGCT ACGGCGCCGA CGCCGTGACC CTGTCGCCCT TCATGGGCTT CGACTCGGTG GCGCCCTACC TCAAGCACCA GGGCAAGGGC GCCTTCCTGC TCTGCCGCAC CAGCAACCCC GGCGGCTCCG ACCTGCAGGG CCAGCGGCTG GCGGGCATCG AGGGCCAGCC CTTCCTCTAC GAACACGTCG CCCGGCTGGC GCAGGGCCCA TGGAACCTCA ACGGCCAGCT CGGCCTCGTG GTGGGCGCGA CCTACCCGGC CGAGATCGAG CGCGTGCGCG AACTCGCACC GACGGTGCCG CTGCTGATCC CCGGCGTCGG TGCCCAGGGC GGCGATGCGG TGGCCACGGT GCGCGCCGGC TGGCGCCCCG ATGCGCCGAT CATCGTGAAC TCGTCGCGCG CCATCATCTA CGCCTCCTCG GGCGACGACT TTGCCGAGGC GGCCCAAAAG GCCGCACGCT CTACGCGCGA CGCGCTGGAA GCCGCGAAGC CCTGA
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Protein sequence | MTFLDKLATA QQTNGSLLCV GLDPEPAKFP GQLKGDASRI YDFCARIVDA TAGLVIAFKP QIAYFAAHRA EAQLEQLMEH MRRNAPGVPV ILDAKRGDIG STAEQYAIEA FERYGADAVT LSPFMGFDSV APYLKHQGKG AFLLCRTSNP GGSDLQGQRL AGIEGQPFLY EHVARLAQGP WNLNGQLGLV VGATYPAEIE RVRELAPTVP LLIPGVGAQG GDAVATVRAG WRPDAPIIVN SSRAIIYASS GDDFAEAAQK AARSTRDALE AAKP
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