Gene Vapar_5081 details

Gene Information

• Locus tag: Vapar_5081
• ID: 7974200
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 5394459
• End bp: 5395193
• Gene Length: 735 bp
• Protein Length: 244 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 644795675
• Product: helix-turn-helix domain protein
• Protein accession: YP_002946949
• Protein GI: 239818039

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCACCA CCGTCGACCT CGTCCAAGCC CTCAAGAACG AACTCAAGAG CGCCCGCATG 
ACCTACGCCG ACCTGGCGCG CTCGCTCGAC ATGGCCGAAT CCAGCGTGAA GCGCATGCTG 
GCCAAGAGCG ACATGCCGCT GTCGCGGGTC GACGCGATCT GCCGCGCGCT CAAGATCGAC 
TTCGCCGAGC TGGCGCGCCG CGTGGCCGAC GCCCAGCCGC TCTTGAAGGA ACTCACGCAC 
GAGCAGGAAA AGGCGGTGGT CAAGGACAAG AAGCTGCTGC TGGTGGCCAT CAGCGTGCTG 
AGCCAGTGGA CGCTGGAGCA GATCGTGGCG GCCTACCGGA TCAGCGAGGC CGAGTGCATC 
GGCTGCCTGG CGCAACTGGA CCGCATCGGC ATCATCGAGC TGCGCCCGCT GAACCGCTAC 
CGGCTGAAGC TGGCCAAGAC CTTCCGCTGG CGGCCGCACG GCCCGGTGAT GGAGTTCTTC 
CGCGAGAACG TGGTGCTCGA CTACTACGCG GGCGGCTTCG ACGGCCCGGC CGAGGGGCTA 
TTGCTGGTGC ACGGGCAGAT CAGCCGCTCG CTCGCGCCGG CCTTCCTCGA ACGCCTGCAG 
CGCGTGGCGC AGGACTTTGC GCAGCAGCAC CAGACCGACC AGAAGCTGGC CGCGAAGGAC 
CGCGAGGGCT ACACCTTGCT GCTGGGCATG CGCAACTGGG AGTTCGAAGC TTTCACCAGG 
CTGCGCCGCG CCTGA 

 

Protein sequence

MSTTVDLVQA LKNELKSARM TYADLARSLD MAESSVKRML AKSDMPLSRV DAICRALKID 
FAELARRVAD AQPLLKELTH EQEKAVVKDK KLLLVAISVL SQWTLEQIVA AYRISEAECI 
GCLAQLDRIG IIELRPLNRY RLKLAKTFRW RPHGPVMEFF RENVVLDYYA GGFDGPAEGL 
LLVHGQISRS LAPAFLERLQ RVAQDFAQQH QTDQKLAAKD REGYTLLLGM RNWEFEAFTR 
LRRA