Gene Vapar_5067 details

Gene Information

• Locus tag: Vapar_5067
• ID: 7974186
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 5380167
• End bp: 5380799
• Gene Length: 633 bp
• Protein Length: 210 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644795661
• Product: Lysine exporter protein (LYSE/YGGA)
• Protein accession: YP_002946935
• Protein GI: 239818025
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1280] Putative threonine efflux protein

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCTTGT CCACCTATCT GCTGTTCCTG CCGGCCTGCT TCGCCATCAA CATGGCTTTC 
GGCCCCAACA ACCTGCTGTC GGTCACCAAC GGCGCGCGCC ACGGCGTTTC GCCGGCGGTC 
ATCGCGGCCG GCGGGCGCCT CGCGGCCTTC GCCATCATGA TCGCCATCGC GGGCCTGGGC 
ATGGGCGCGG TGCTGGTCGC GTCGGAGCTG GCCTTCGACG TCATCAAGTA CATCGGCGCC 
GCCTACCTCG TGTGGATCGG CGTCCGCCTG CTGCGCGCCC CGGCGCCGGC GGCCGAGGCG 
CAGGCAGCGG ACGCGGCCGC GCCGCCCTCG ATGCGCGCGC TGGTGCGCCA GGAGTTCACC 
GTGGCAGCGG GCAATCCCAA GGCGATCCTG GTGTTCACGG CCTTCTTTCC GCAGTTCGTG 
GTGCCGGGGG CCTATGCCAC CAGCTACCTG CTGCTGGGCA CCACCTTCCT GCTGCTCGAA 
GTGGTTGCGA TCGCACTCTA CGCGATGCTC GGCGCCCGCA TGCGCCGTCT CGCCGACGGC 
AGCCGCGCGA TGCGCTGGTT CAACAAGGTG AGTGGCAGCA TGATGGTCGG CTTCGGGCTG 
CTGCTGGCCT TCACGCGCCG CCCCGCCGCC TGA 

 

Protein sequence

MTLSTYLLFL PACFAINMAF GPNNLLSVTN GARHGVSPAV IAAGGRLAAF AIMIAIAGLG 
MGAVLVASEL AFDVIKYIGA AYLVWIGVRL LRAPAPAAEA QAADAAAPPS MRALVRQEFT 
VAAGNPKAIL VFTAFFPQFV VPGAYATSYL LLGTTFLLLE VVAIALYAML GARMRRLADG 
SRAMRWFNKV SGSMMVGFGL LLAFTRRPAA