| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5066 |
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| Symbol | |
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| ID | 7974185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5379109 |
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| End bp | 5380074 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795660 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002946934 |
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| Protein GI | 239818024 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCTCA CCGAACTCAA ATACATCGTC GCAGTGGCCC GCGAACGGCA CTTCGGCAAG
GCGGCCGAGG CCTGCTACGT CTCCCAACCC ACGCTCTCGG TGGCCATCAA GAAGCTCGAG
GACGAACTCG AGGTCAAGCT CTTCGAGCGC AGTGCCGGCG AAGTCACCGT CACGCCGCTC
GGCGAGCAGA TCGTGCAGCA GGCGCAGAGC GTGCTCGACC AGGCCGCCAG CATCAAGGAA
ATCGCCAAGC GCGGAAAAGA CCCGCTGGCC GGCCCGCTGA ACCTCGGCGT GATCTACACC
ATCGGGCCCT ACCTTCTGCC CGACCTGGTG CGCCAGGTGA TCGCGCGCAC GCCGCAGATG
CCGCTGGTGC TGCAGGAGAA CTTCACCGCC AAGCTGCTCG AGATGCTGCG TGCCGGCGAG
ATCGACTGCG CGATCATGGC CGAGCCCTTC CCCGACACCG GCCTGGCCAT GGCGCCGCTG
TACGACGAGC CCTTCATGGC GGCGCTGCCC ACGAAGCACA AGTTCGCCGA CCGCGAATCG
GTCACTTCGG AAGAGCTGCA GAACGAGACC ATGCTGCTGC TGGGCACCGG CCACTGCTTT
CGCGACCACG TGCTCGAGGT CTGCCCCGAG TTCGCGCGCT TCTCGAGCAA CGCCGAGGGC
ATCCGCAAGA GCTTCGAGGG CTCGTCGCTC GAGACCATCA AGCACATGGT GGCATCGGGC
ATGGGCGTGA CGCTGGTGCC GCGCCTGTCG GTGCCGGCCG AAGCCCTCAA GCCCAAGGTC
AAGGGACGCA AGGAGCCCGA GCAGATGGTG CGCTACCTGC CGGTGCGCGA CGCGCAGGAC
CGCGATCCGC CGACGCGGCG CGTGGTGCTG GCCTGGCGCC GCACCTTCAC GCGCTACGAG
GCGATCGCGG CCTTGCGCAA CGCGATCTAT GCCTGCGAGC TGCCGGGCGT CAAGCGGCTG
TCGTAG
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| Protein sequence | MTLTELKYIV AVARERHFGK AAEACYVSQP TLSVAIKKLE DELEVKLFER SAGEVTVTPL
GEQIVQQAQS VLDQAASIKE IAKRGKDPLA GPLNLGVIYT IGPYLLPDLV RQVIARTPQM
PLVLQENFTA KLLEMLRAGE IDCAIMAEPF PDTGLAMAPL YDEPFMAALP TKHKFADRES
VTSEELQNET MLLLGTGHCF RDHVLEVCPE FARFSSNAEG IRKSFEGSSL ETIKHMVASG
MGVTLVPRLS VPAEALKPKV KGRKEPEQMV RYLPVRDAQD RDPPTRRVVL AWRRTFTRYE
AIAALRNAIY ACELPGVKRL S
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