Gene Vapar_5058 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5058 
Symbol 
ID7974177 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5373470 
End bp5374009 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content59% 
IMG OID644795652 
Productribosomal protein L5 
Protein accessionYP_002946926 
Protein GI239818016 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0094] Ribosomal protein L5 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0491308 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACGTC TCCAACAACA CTATCGCGAA AAGATCGCGA AAGACCTGAC GGAAAAGTTC 
GGCTACAAGT CGCCGATGCA GGTCCCCCGC CTCACCAAGA TCACGCTCAA CATGGGCGTG
GGTGAAGCTG TCGCCGACAA GAAGGTCCTG GACAACGCAG TTGCCGACCT GACCAAGATC
GCCGGCCAGA AGCCCGTGGT CACCAAGTCG AAGAAGGCCA TCGCCGGTTT CAAGATCCGC
GAAAACCAGC CGATCGGCTG CATGGTCACG CTGCGTGGCG TGCAGATGTA TGAGTTCCTG
GACCGTTTCG TGACCATCGC GCTGCCGCGT GTTCGCGACT TCCGCGGCAT TTCCGGCCGT
GCGTTCGACG GCCGTGGCAA CTACAACATC GGCGTCAAGG AACAGATCAT TTTCCCCGAG
ATCGAATACG ACAAGGTCGA TGCCCTGCGC GGTCTCAACA TCAGCATCAC GACGACGGCC
AAGACCGACG AAGAAGCCAA GGCGCTTCTC GCTGGTTTCC GTTTCCCGTT CAAGAACTGA
 
Protein sequence
MARLQQHYRE KIAKDLTEKF GYKSPMQVPR LTKITLNMGV GEAVADKKVL DNAVADLTKI 
AGQKPVVTKS KKAIAGFKIR ENQPIGCMVT LRGVQMYEFL DRFVTIALPR VRDFRGISGR
AFDGRGNYNI GVKEQIIFPE IEYDKVDALR GLNISITTTA KTDEEAKALL AGFRFPFKN