Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5058 |
Symbol | |
ID | 7974177 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5373470 |
End bp | 5374009 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 644795652 |
Product | ribosomal protein L5 |
Protein accession | YP_002946926 |
Protein GI | 239818016 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0094] Ribosomal protein L5 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0491308 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACGTC TCCAACAACA CTATCGCGAA AAGATCGCGA AAGACCTGAC GGAAAAGTTC GGCTACAAGT CGCCGATGCA GGTCCCCCGC CTCACCAAGA TCACGCTCAA CATGGGCGTG GGTGAAGCTG TCGCCGACAA GAAGGTCCTG GACAACGCAG TTGCCGACCT GACCAAGATC GCCGGCCAGA AGCCCGTGGT CACCAAGTCG AAGAAGGCCA TCGCCGGTTT CAAGATCCGC GAAAACCAGC CGATCGGCTG CATGGTCACG CTGCGTGGCG TGCAGATGTA TGAGTTCCTG GACCGTTTCG TGACCATCGC GCTGCCGCGT GTTCGCGACT TCCGCGGCAT TTCCGGCCGT GCGTTCGACG GCCGTGGCAA CTACAACATC GGCGTCAAGG AACAGATCAT TTTCCCCGAG ATCGAATACG ACAAGGTCGA TGCCCTGCGC GGTCTCAACA TCAGCATCAC GACGACGGCC AAGACCGACG AAGAAGCCAA GGCGCTTCTC GCTGGTTTCC GTTTCCCGTT CAAGAACTGA
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Protein sequence | MARLQQHYRE KIAKDLTEKF GYKSPMQVPR LTKITLNMGV GEAVADKKVL DNAVADLTKI AGQKPVVTKS KKAIAGFKIR ENQPIGCMVT LRGVQMYEFL DRFVTIALPR VRDFRGISGR AFDGRGNYNI GVKEQIIFPE IEYDKVDALR GLNISITTTA KTDEEAKALL AGFRFPFKN
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