| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5046 |
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| Symbol | rpsD |
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| ID | 7974165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5367512 |
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| End bp | 5368135 |
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| Gene Length | 624 bp |
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| Protein Length | 207 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644795640 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_002946914 |
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| Protein GI | 239818004 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCACGCT ACCTCGGCCC CAAGGCCAAA CTCTCCCGCC GTGAAGGCAC CGACCTGTTC
CTGAAGAGCG CCCGCCGCTC CATCCAGGAC AAGGCCAAGT TCGATTCCAA GCCCGGCCAG
CATGGCCGCA CTTCGGGTCA GCGTACCTCC GACTACGGCC TGCAGCTGCG CGAAAAGCAG
AAGGTCAAGC GCATGTACGG CGTGCTCGAG AAGCAGTTCC GCCGCTACTT CGAAGAAGCC
GACCGCCGCC GTGGCAACAC CGGCGCCAAC CTGCTGTTCA TCCTCGAATC GCGCCTGGAC
AACGTCGTCT ACCGCATGGG CTTCGGCTCG ACGCGCGCCG AAGCACGCCA GCTCGTGTCG
CACAAGGCGA TCACGGTGAA TGGCCAGTCG GTCAACATCC CGTCGTACCT GGTGAAGACC
GGCGACGTGA TCGCCGTTCG CGACAAGTCG AAGAAGCAGA CCCGCATTGC CGAAGCGCTC
CAGCTCGCCC AGCAGGTCGG CATCCCGGCC TGGGTCGAAG TGAACGCCGA CAAGGCCGAA
GGTACCTTCA AGAAGGTGCC CGATCGCGAC GAATTCGCAG CCGACATCAA CGAATCGCTG
ATCGTCGAAC TGTACTCGCG CTAA
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| Protein sequence | MARYLGPKAK LSRREGTDLF LKSARRSIQD KAKFDSKPGQ HGRTSGQRTS DYGLQLREKQ
KVKRMYGVLE KQFRRYFEEA DRRRGNTGAN LLFILESRLD NVVYRMGFGS TRAEARQLVS
HKAITVNGQS VNIPSYLVKT GDVIAVRDKS KKQTRIAEAL QLAQQVGIPA WVEVNADKAE
GTFKKVPDRD EFAADINESL IVELYSR
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