| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5045 |
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| Symbol | |
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| ID | 7974164 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5366394 |
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| End bp | 5367383 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644795639 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_002946913 |
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| Protein GI | 239818003 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAACCA CCCTGCTGAA ACCCAAGACC ATCCAGGTCG AGCAACTTGC CGCCAACAAG
GCCAAGGTCA CGCTCGAGCC TTTCGAGCGC GGCTACGGCC ACACGCTCGG CAACGCGCTG
CGCCGCGTCC TGCTGTCGTC GATGGTCGGT TATTCGGCCA CTGAAGTCAC GATCGCCGGC
GTGCTGCACG AGTACTCGTC GATCGACGGC GTGCAGGAAG ATGTCGTCAA CATCCTGCTG
AATCTCAAGG GCGTGGTGTT CAAGCTCCAC AACCGCGACG AAGTCACGCT GAGCCTGCGC
AAGGACGGCG AAGGCCCGGT GCTCGCGTCG GACATCCAGA CCCCGCACGA CGTCGAGATC
ATCAACCCCG ACCACGTGAT CGCGCACCTG TCGCAAGGCG GCAAGCTCGA CATGCAGATC
AAGGTCGAAA AGGGCCGCGG CTACGTGCCC GGCACGATGC GCCGCTATGC CGACGAGCCG
ACCAAGTCGA TCGGCCGCAT CGTCCTGGAC GCCTCGTTCT CGCCCGTCAA GCGCGTGAGC
TACACGGTCG AAAGCGCCCG TGTCGAACAG CGCACCGACC TGGACAAACT GCTGGTCGAG
ATCGAAACCA ACGGTGCGAT CACGGCCGAA GACGCCGTGC GCGCCTCGGC TAAAATCCTG
GTCGAGCAGC TGGCCGTGTT CGCGCAGCTC GAAGGCGGCG AACTGGCTGC ATTCGATGCG
CCGGCACCGC GCAGCGCACA GCAATTCGAT CCGATCCTGC TGCGCCCTGT CGACGAGCTC
GAGCTCACCG TGCGTTCGGC CAACTGCCTG AAGGCCGAAA ACATCTACTA CATCGGCGAC
CTGATCCAGC GCACCGAGAA CGAGCTGCTC AAGACCCCGA ACCTGGGTCG CAAGTCGCTC
AACGAAATCA AGGAAGTGCT TGCCTCGCGC GGCCTGACCT TGGGTATGAA GCTTGAAAGC
TGGCCGCCGG CCGGCCTCGA CAAGCGTTGA
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| Protein sequence | MQTTLLKPKT IQVEQLAANK AKVTLEPFER GYGHTLGNAL RRVLLSSMVG YSATEVTIAG
VLHEYSSIDG VQEDVVNILL NLKGVVFKLH NRDEVTLSLR KDGEGPVLAS DIQTPHDVEI
INPDHVIAHL SQGGKLDMQI KVEKGRGYVP GTMRRYADEP TKSIGRIVLD ASFSPVKRVS
YTVESARVEQ RTDLDKLLVE IETNGAITAE DAVRASAKIL VEQLAVFAQL EGGELAAFDA
PAPRSAQQFD PILLRPVDEL ELTVRSANCL KAENIYYIGD LIQRTENELL KTPNLGRKSL
NEIKEVLASR GLTLGMKLES WPPAGLDKR
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