| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5030 |
|---|
| Symbol | |
|---|
| ID | 7974148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 5351595 |
|---|
| End bp | 5352608 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644795623 |
|---|
| Product | Pyruvate dehydrogenase (acetyl-transferring) |
|---|
| Protein accession | YP_002946898 |
|---|
| Protein GI | 239817988 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACCCGA GCAATTCAGG CACGGCGCTG TACCGCGCCA TGGTGCGCAT CCGCGCCTTC
GAGAACGCCG CCGAAGCCGC GAGCCAGGGC GGCGTGAGCG CCTATGGCCA GCAGGCCGCC
GGTGCCGCCA AGGTGCGCGG GCCGCTGCAT CTTTCGACCG GCCAGGAGGC GGTGCCCGCG
GGCGTCTGCG CGCATCTGCG TACGAGCGAC TACCTCACCT CCACCCACCG CGGCCACGGC
CACACGCTGG CCAAGGGCGC GGACCTCGCC CGCATGATGT GCGAGCTGTT CGGCAAAGCC
ACCGGCTTCA ACGGCGGCAA GGGCGGCTCG ATGCACATCG CGGACTTCTC GGTCGGCATG
CTGGGCGCGA ACGGCGTGGT GGCGGCGGGG CTGCCGATTG CGGTGGGCGC GGCGCATGCG
CAGAAGCTGC TCCGAAAGAA CAATGACATC ACGGTCTGCT TCTTCGGCGA CGGCGCGATC
AACCGCGGCC CTTTCCTCGA AGCACTGAAC TGGGCGCGCG TGTACGGCCT GCCGGTGCTC
TTCGTCTGCG AGGACAACCG TTGGAGCGCC ACCACCGCGA GCGGGCCGAT GACGGCCGGT
GACGGCGCCT CGGCACGCGC CGCGTCGATG GACATCGCGG CCACGCAGGT CGATGGCAAC
GACGTGTTCG CGGTGCACGA AACCGCCGCG CGGCTGGTCG CCGAAGTGCG CGGCGGCGGC
GGACCGCGGC TGCTGCATGC GCTGACCTAC CGCGTGAAGG GGCATGTGTC GGTCGACCTC
GCGGCCTATC GCGATCCGGC CGAACTGGCC GCCGCACTCG AAACCGATCC GATCGCGCGG
GCGCGCGGGC AGCTGCTGGA CATGGGCGTG GATGCCGCGA CGCTGGATGC CATCGAGAAT
GCCGCGCGCG ACGAGGTCGA TACCGCGCTG GCCGTGGCCG ACGCCGCGCC CTGGCCCGAG
GCCAGCGCTG CCTTCACCGA CGTGCAGACC ACGGGAGCAG GCCAATGGTA TTGA
|
|---|
| Protein sequence | MDPSNSGTAL YRAMVRIRAF ENAAEAASQG GVSAYGQQAA GAAKVRGPLH LSTGQEAVPA
GVCAHLRTSD YLTSTHRGHG HTLAKGADLA RMMCELFGKA TGFNGGKGGS MHIADFSVGM
LGANGVVAAG LPIAVGAAHA QKLLRKNNDI TVCFFGDGAI NRGPFLEALN WARVYGLPVL
FVCEDNRWSA TTASGPMTAG DGASARAASM DIAATQVDGN DVFAVHETAA RLVAEVRGGG
GPRLLHALTY RVKGHVSVDL AAYRDPAELA AALETDPIAR ARGQLLDMGV DAATLDAIEN
AARDEVDTAL AVADAAPWPE ASAAFTDVQT TGAGQWY
|
|---|
| |