Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5027 |
Symbol | |
ID | 7974145 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 5345794 |
End bp | 5346660 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644795620 |
Product | transcriptional regulator, LysR family |
Protein accession | YP_002946895 |
Protein GI | 239817985 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCAACG AACTCAGAAC CTTCATCGCC GTCTGCCGCC ACGGCACCTT TGCCGCCGCG GGAGAGCGGA TTGGCCTGAC GCAATCGGCG GTCAGCAGCC AGGTCAAGCG GCTCGAGGAA GCCCTGGGGT TCGCGCTGTT CGAACGCACC GGGCGCTCGG CCACCTTGAA TGCGGCCGGC CAGACGACGC TGGCGCGCGC GGAGGAGATC TGCGCGCTCT ACGCCAAGCT CGGCGAGCTT CCCGATGACG CCGCGAGCGG CGGGCTGCTG CGCATCGGCG CCATTGCCTC GGCGCAGTCG ACGCTGGTCG CGCGGGCGCT TGCAAGGCTG CGCAAGCAGC AGCCGCTGCT GCGCGTCCAT GTGTCGCCGG GCGTGTCGAT GCGGCTGATG GACGAGCTCG ACGCGGGAAC GATCGATGCC GCGGTGATCA TCCGGCCGCC GTTCGGCATT CTTCCGGAGC TGGCGTGGCA GCCGCTGGTG CAGGAGCCGT ACGTGCTCAT CGCGCCCAAG AAACTGCCGG GCAAGGACTG GCGCGCGCTG CTCCAGGAGC AGCCCTTCCT GCGCTATGAC CGCGCGTCCT TCGGCGGCCG CATGGTGGAA AGATTCCTCC GGCGCGAAGG CATCGCGGTC AACGATTCGA TCGAACTCGA CGAGATCGCC GGGCTCATCC ACATGGCGTC CAAGGGACTG GGCGTTGCGC TCGTTCCGCT GGTCGAGGCG CACCTTCCGC TGCCCGCGGG TGTTCGCATG CTCTCGCTCG GCGAGCTCAC GTTCCACCGC GAGGTGGGCC TGCTGCTGCG CAAGCCGCGC GCCAGCCCGC CTGCCGCCGC GCTGTTTGCG CAGTGCCTGC GGGAAGCCGC TCAATAG
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Protein sequence | MINELRTFIA VCRHGTFAAA GERIGLTQSA VSSQVKRLEE ALGFALFERT GRSATLNAAG QTTLARAEEI CALYAKLGEL PDDAASGGLL RIGAIASAQS TLVARALARL RKQQPLLRVH VSPGVSMRLM DELDAGTIDA AVIIRPPFGI LPELAWQPLV QEPYVLIAPK KLPGKDWRAL LQEQPFLRYD RASFGGRMVE RFLRREGIAV NDSIELDEIA GLIHMASKGL GVALVPLVEA HLPLPAGVRM LSLGELTFHR EVGLLLRKPR ASPPAAALFA QCLREAAQ
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