Gene Vapar_5027 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5027 
Symbol 
ID7974145 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5345794 
End bp5346660 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content69% 
IMG OID644795620 
Producttranscriptional regulator, LysR family 
Protein accessionYP_002946895 
Protein GI239817985 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCAACG AACTCAGAAC CTTCATCGCC GTCTGCCGCC ACGGCACCTT TGCCGCCGCG 
GGAGAGCGGA TTGGCCTGAC GCAATCGGCG GTCAGCAGCC AGGTCAAGCG GCTCGAGGAA
GCCCTGGGGT TCGCGCTGTT CGAACGCACC GGGCGCTCGG CCACCTTGAA TGCGGCCGGC
CAGACGACGC TGGCGCGCGC GGAGGAGATC TGCGCGCTCT ACGCCAAGCT CGGCGAGCTT
CCCGATGACG CCGCGAGCGG CGGGCTGCTG CGCATCGGCG CCATTGCCTC GGCGCAGTCG
ACGCTGGTCG CGCGGGCGCT TGCAAGGCTG CGCAAGCAGC AGCCGCTGCT GCGCGTCCAT
GTGTCGCCGG GCGTGTCGAT GCGGCTGATG GACGAGCTCG ACGCGGGAAC GATCGATGCC
GCGGTGATCA TCCGGCCGCC GTTCGGCATT CTTCCGGAGC TGGCGTGGCA GCCGCTGGTG
CAGGAGCCGT ACGTGCTCAT CGCGCCCAAG AAACTGCCGG GCAAGGACTG GCGCGCGCTG
CTCCAGGAGC AGCCCTTCCT GCGCTATGAC CGCGCGTCCT TCGGCGGCCG CATGGTGGAA
AGATTCCTCC GGCGCGAAGG CATCGCGGTC AACGATTCGA TCGAACTCGA CGAGATCGCC
GGGCTCATCC ACATGGCGTC CAAGGGACTG GGCGTTGCGC TCGTTCCGCT GGTCGAGGCG
CACCTTCCGC TGCCCGCGGG TGTTCGCATG CTCTCGCTCG GCGAGCTCAC GTTCCACCGC
GAGGTGGGCC TGCTGCTGCG CAAGCCGCGC GCCAGCCCGC CTGCCGCCGC GCTGTTTGCG
CAGTGCCTGC GGGAAGCCGC TCAATAG
 
Protein sequence
MINELRTFIA VCRHGTFAAA GERIGLTQSA VSSQVKRLEE ALGFALFERT GRSATLNAAG 
QTTLARAEEI CALYAKLGEL PDDAASGGLL RIGAIASAQS TLVARALARL RKQQPLLRVH
VSPGVSMRLM DELDAGTIDA AVIIRPPFGI LPELAWQPLV QEPYVLIAPK KLPGKDWRAL
LQEQPFLRYD RASFGGRMVE RFLRREGIAV NDSIELDEIA GLIHMASKGL GVALVPLVEA
HLPLPAGVRM LSLGELTFHR EVGLLLRKPR ASPPAAALFA QCLREAAQ