Gene Vapar_5025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5025 
Symbol 
ID7974143 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5344393 
End bp5344833 
Gene Length441 bp 
Protein Length146 aa 
Translation table11 
GC content66% 
IMG OID644795618 
ProductGlyoxalase/bleomycin resistance protein/dioxygenase 
Protein accessionYP_002946893 
Protein GI239817983 
COG category[R] General function prediction only 
COG ID[COG3565] Predicted dioxygenase of extradiol dioxygenase family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGCCA TGAATGCACC CCCCACGAGA ATTCCGTTCC ACCTGGCTTT CCCCGTCCGC 
GACATTGCCG AAGCCCGCGC CTTCTACGGC GAGCTGCTCG GATGCCCCGA GGGCCGCAGC
GCGCCCGAAT GGGTCGACTT CGACTTCTAC GGCCACCAGA TCGTGGCGCA CCTCGCCCCC
GATGAATGCG GCCACAAGGC CAGCAGCGCG GTCGACGGGC ACGACGTGCC GGTGCGCCAC
TTCGGCGCCA TCCTCCCGAT GGACCAATGG CAGGCGCTGG CCGACAAGCT GGTCGCGCGC
CAGACCCGCT TCGTGATCGA GCCCTACATC CGCTTCAAGG GCGAGCCGGG CGAACAGGCG
ACGATGTTCT TCCTCGATCC GTCGGGCAAT GCCATCGAGA TGAAGTCCTT CGCGAATCTC
GATTCGCTGT TCGCCGTCTG A
 
Protein sequence
MAAMNAPPTR IPFHLAFPVR DIAEARAFYG ELLGCPEGRS APEWVDFDFY GHQIVAHLAP 
DECGHKASSA VDGHDVPVRH FGAILPMDQW QALADKLVAR QTRFVIEPYI RFKGEPGEQA
TMFFLDPSGN AIEMKSFANL DSLFAV