| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5024 |
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| Symbol | |
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| ID | 7974142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5343127 |
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| End bp | 5344149 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795617 |
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| Product | D-xylose ABC transporter, periplasmic substrate-binding protein |
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| Protein accession | YP_002946892 |
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| Protein GI | 239817982 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02634] D-xylose ABC transporter, substrate-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACTCA AGCACACCCT GGCCGCCATG GCCTTCGGCC TTTCTGCCGT GGGCGCAGTG
GCCCAGACCG TGGTCGGCGT GAGCTGGTCC AACTTCCAGG AAGAGCGCTG GAAGACCGAC
GAGGCCGCGA TCAAGGCGCA GCTCGAGAAG CTCGGCGCCA AGTACATCAG CGCCGACGCG
GGCGGCTCGC CCGAGAAGCA GCTGGGCGAC ATCGAGGGGC TGATGTCGAA GGGCGCCAAG
GCGCTCATCG TGCTGGCCAT GGACAAGGAC GCGATCCTTC CGGCCGTCAC CAAGGCCACG
CGCCAGAAGG TGCCCGTGGT GGCCTACGAC CGGCTGATCG AGGCGCCCGG CGTCTTCTAC
ATCACCTTCG ACAACGTCGA GGTCGGCCGC ATGGAGGCGC GCGAGGTCTT CAAGGTCAAG
CCCAAGGGCA ACTACGTGAT CATCAAGGGC TCGCCGAGCG ACCCGAACGC CGACTTCCTG
CGCGCGGGCC AGCAGGAGGT GCTCGACGCG GCCGTGAAGA AGGGCGACAT CAAGATCGTC
GGCGACGAAT ACACCGAAGG CTGGAAGCCC GAGGTGGCGC AGAAGAACAT GGAGCAGATC
CTCACCAAGA ACGCCAACAA GGTCGACGCG GTGGTGGCTG CCAACGACGG CACGGCCGGC
GGCGCGGTGG CCGCGCTCAC GGCCAAGGGC CTGCGCGGCA TTCCGGTGTC GGGGCAGGAC
GCCGATTTCG CGGCGCTCAA CCGCATTGCG CTGGGCACGC AGACCGCGAC CATCTTCAAG
GACTCGCGCG AACTCGGCCG CGAGGCCGCC AGCGCCGCCA TCGCGCTGTC GCAGGGCAAG
CCGGTCGAGA AGGCCGCGCC CTGGAATTCC GGGCCGAAGA AGATCTCGCT GTCCTCGCGC
CTGCTCACGC CGGTGCCGAT CACGCGCGAC AACCTCGACG TGGTCGTGAA GGCCGGCTGG
ATCAAGAAGG ACGAGCTCTG CAAGGGCGTC CCGGCGGCCA GCGCACCCGC GGCCTGCAAG
TAG
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| Protein sequence | MQLKHTLAAM AFGLSAVGAV AQTVVGVSWS NFQEERWKTD EAAIKAQLEK LGAKYISADA
GGSPEKQLGD IEGLMSKGAK ALIVLAMDKD AILPAVTKAT RQKVPVVAYD RLIEAPGVFY
ITFDNVEVGR MEAREVFKVK PKGNYVIIKG SPSDPNADFL RAGQQEVLDA AVKKGDIKIV
GDEYTEGWKP EVAQKNMEQI LTKNANKVDA VVAANDGTAG GAVAALTAKG LRGIPVSGQD
ADFAALNRIA LGTQTATIFK DSRELGREAA SAAIALSQGK PVEKAAPWNS GPKKISLSSR
LLTPVPITRD NLDVVVKAGW IKKDELCKGV PAASAPAACK
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