Gene Vapar_5016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5016 
Symbol 
ID7974134 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5330107 
End bp5332227 
Gene Length2121 bp 
Protein Length706 aa 
Translation table11 
GC content70% 
IMG OID644795609 
Producthypothetical protein 
Protein accessionYP_002946884 
Protein GI239817974 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.276526 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCTCTC TCACCCGCAA GATTCCCCAT GCGCTGTCCG TTGTCACCCT GGCGCTGCTT 
GGCGCGTGCG GCGGAGGAGG TGGAGGTGGT GGCGGCGGCG GGTTCGGCTT CATCCCGCCG
GCCTCGAACG GCGGCGACCC GCCCGCGGCG GCCGGCACCA CCTTGAGCGG CACCGTCGCC
ACCGGTGCAG CCCTGGCCGG CGCGGTGCTC ACGGTGTTCG ACCAGACCGG CGCCAAGGTC
TGCGAAGTGA CCACCACGGC CGAAGGCAGC TACAGCTGCT CGCTGCCCGC CGGCACCAAG
GCGCCGCTGG TGATCCAGGC CGTGCGCGAC GACCTCACCC TCTACAGCAC CACCGCCAGC
ACCGCCACCG GCACCGCCAA CGTGACGCCG CTGACCACCA TCGTGGTGGC GCAGCTCGCG
CCCAACGGCG ATCCGGCCAA GCTGGCCGCC GCGATCCAGG CCGACGCCGG CGCCGTCACG
GCCGGATCGA TCGGCGACCA GGTGGCCAGG CTGCTGGCTG CGCTGCAGCC GCTGCTCGCC
GCGCTCGACG CGAGCATCGA CCCGATGAGC GGCGAGTTCC AGGCCAACGG CACCGGCCAG
GACCGCGTGC TCGACGCGCT CAACGTGTCG GTGCGCCCCG ACGGCACGGC ATCCAACATC
GAGATCACGG TGAAGGCGCT GCCCGCCGGC GACGACAGCC CGCCGGTGTC CATCGTCTTT
CGCAGCGGCG ACGCCACCAT TGCGGCGCTG CCCGCCATCG ATGCCGCAAC GCTGGTGCAG
CCGCCCACGC CGGCCATGGT GCAGGCGCTG CTCGATCGCA TCAACGCCTG CTATGCGCTG
CCGCTCGCAC AGCGCGTCGA CAGCCCCATC GAGGCCGACG GCAATGCCTA CGGCAGCGCC
GCCAACGTGG TGGCGCCGGC CTGCCGCACG CTGTTCGTGA ACGACGATCC GGCCAGCTTC
GTGGCGGCCG GCGCGCCCAT CGGCCGCGTG AGCAGCGGTG CGCGCCGCTC GTTCGAAAGC
CTGTTCCGCT TCGGCCCCAC CAACCTGAAG CACGACCGCG GCAACTTCGA ATACTTCCAC
AAGAACGGCG ACATCGCGCT CACCTACCGC TGGACCGACG TCCTGGGCAA CACCGACAAC
GACGTCTTCA ACGCGAAGAT CGTGGACGGT GCGCTGAAGC TCACCGGCAA CGGCAACACC
TACCGCGCCT TCGTGCGTCC CCAGCTCGAC AAGAAGGACT ACCTGAAGCA CCAGAACCTG
GTGTTCCATT CGGTCGGCTA CGCGGTTTCA GTCGACAACG TGCGCGACGG CAATGGCAAC
CCGGTGCTGT CGAAGGTGGT GGCAACCACC GCATCGCTGC CTGGCAAGGA ACTGGTGCTG
GTGCCCAAGG CCGGCCTCAA CTCGCTGGTG CTCACGCCGG ACGGCACGGC CGGTTCGGCC
CTGAATTCGG CGGTGTGGCG CATGTCCGCA CGCTACCTGG ACCCGGCCCA GCCCGGCAGC
CCGAGCGATT TCGACAACGC CAACCTCTTT GCCACGCCGG CGTACACCGA CGAGGAGCTT
GGCAAGATCG CCGACCAGTC GGTGTGGAAG CTCGAGTTCT TCCACGCCGA CGGCGCGACG
CCGAACGTGG TGCAGTACGT GCGCACCTTC TCCCGCGTGC CCACCATCGC GGAAGCCGTG
CAGACGCCCA TGGTGGAGCT CACGCCCGCG CTGCGTGCCC AGGTGCTCGC GGAAAGCCTG
GGCAGCCCGC GCGGCATCGT CTTTGCGGCA CCCACGCCTT CGGAGCCCAA CAACGTCGAC
TTCAGCGCCG ACGGCGGCCT CGACGGCTGG ACGGTTCCGG CCGGGGCGCT CGCGCCCACC
TCGTTCAGCG TCTTCGGCCG GGCGCCGGGC GCTGGCGGCG CGCGCTTCAG CGAAACCGTC
ACCGTGCGCA GCACCGCGCG CAAGGCCATG GTCTATTGCC AGCCGGTGGG CGCGAGCGAC
ACGCATTGCG TGCCGGCGGG CAACAGCAGC TGGCAGTACG CCCAGGGCTC CTCGATCAGC
ACCTTCGGCT TCACGGCCCG CACCGCGCGC CAGGTCGACG TGCGCAAGAA CTTCGAGGTG
TGGACGGTCA CGCTGCCCTG A
 
Protein sequence
MPSLTRKIPH ALSVVTLALL GACGGGGGGG GGGGFGFIPP ASNGGDPPAA AGTTLSGTVA 
TGAALAGAVL TVFDQTGAKV CEVTTTAEGS YSCSLPAGTK APLVIQAVRD DLTLYSTTAS
TATGTANVTP LTTIVVAQLA PNGDPAKLAA AIQADAGAVT AGSIGDQVAR LLAALQPLLA
ALDASIDPMS GEFQANGTGQ DRVLDALNVS VRPDGTASNI EITVKALPAG DDSPPVSIVF
RSGDATIAAL PAIDAATLVQ PPTPAMVQAL LDRINACYAL PLAQRVDSPI EADGNAYGSA
ANVVAPACRT LFVNDDPASF VAAGAPIGRV SSGARRSFES LFRFGPTNLK HDRGNFEYFH
KNGDIALTYR WTDVLGNTDN DVFNAKIVDG ALKLTGNGNT YRAFVRPQLD KKDYLKHQNL
VFHSVGYAVS VDNVRDGNGN PVLSKVVATT ASLPGKELVL VPKAGLNSLV LTPDGTAGSA
LNSAVWRMSA RYLDPAQPGS PSDFDNANLF ATPAYTDEEL GKIADQSVWK LEFFHADGAT
PNVVQYVRTF SRVPTIAEAV QTPMVELTPA LRAQVLAESL GSPRGIVFAA PTPSEPNNVD
FSADGGLDGW TVPAGALAPT SFSVFGRAPG AGGARFSETV TVRSTARKAM VYCQPVGASD
THCVPAGNSS WQYAQGSSIS TFGFTARTAR QVDVRKNFEV WTVTLP