| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5008 |
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| Symbol | |
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| ID | 7974126 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5321188 |
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| End bp | 5322117 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644795602 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002946877 |
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| Protein GI | 239817967 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCTTTT TCCTCGAAAC CCTGTTCGGC GGCCTGATGG TCGGCATGCT CTATTCGCTG
ATCGCGATCG GCTTCGTGCT GATCTACAAG GCCTCGGGCG TCTTCAACTT TGCGCAGGGC
GCGATGGTGC TGTTCGCGGC GCTCGCGATG GCGCGCTTTG CCGAATGGTT CCCGCAGTGG
TTCGGCTTCG AGAGCCAGGT GCTCGCGAAC ATCCTGGCCT TCATCGCGGC CATGGGGGTG
ATGGTGATCG TGGCCTGGCT GATCGAGCGG CTCGCGCTCA GCAAGCTGGT GAACCAGGAA
GGCATCACGC TGCTGATGGC CACGCTGGGC ATTGCCTACT TCCTCGATGG CGTGGGCCAG
ACGATCTTCG GCAACGACAT CTACAAGATC GACGTGGGCA TGCCCAAGGA ACCGCTGATG
GTGCTGCAGG GCACCTTCCA GGGCGGCCTG CTGCTGAGCC AGGAAGACTT GGTGGCCGCG
CTGGTGGCCG CGGGCCTGGT GGTGGTGCTG GCCGTGTTCT TCCAGAAGAC CGCCACGGGC
CGCGCCCTTC GCGCCGTGGC CGACGACCAC CAGGCCGCGC AGTCGATCGG CATTCCGCTC
AAGCGCATCT GGGTGATCGT GTGGTCGGTG GCGGGCTTCT CGGCGCTGGT GGCCGGGGTC
ATCTGGGGCT CGAAGCTGGG CGTGCAGTTC TCGCTCTCGC TGGTGGCGCT GAAGGCGCTG
CCGGTGGTGA TCCTCGGCGG CCTCACGTCG ATACCGGGCG CGATCATCGG CGGCCTGCTG
ATCGGCGTGG GCGAGAAGCT TTCTGAAATT TATCTCGGCC CCATGCTCGG TGGCGGCATC
GAGATCTGGT TCGCGTATGT ACTCGCACTG GTGTTCCTGC TGGTCCGTCC GCAGGGGTTG
TTCGGCGAAA AAATCATTGA TCGGGTCTGA
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| Protein sequence | MGFFLETLFG GLMVGMLYSL IAIGFVLIYK ASGVFNFAQG AMVLFAALAM ARFAEWFPQW
FGFESQVLAN ILAFIAAMGV MVIVAWLIER LALSKLVNQE GITLLMATLG IAYFLDGVGQ
TIFGNDIYKI DVGMPKEPLM VLQGTFQGGL LLSQEDLVAA LVAAGLVVVL AVFFQKTATG
RALRAVADDH QAAQSIGIPL KRIWVIVWSV AGFSALVAGV IWGSKLGVQF SLSLVALKAL
PVVILGGLTS IPGAIIGGLL IGVGEKLSEI YLGPMLGGGI EIWFAYVLAL VFLLVRPQGL
FGEKIIDRV
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