Gene Vapar_4997 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4997 
Symbol 
ID7974279 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp5311938 
End bp5312606 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content71% 
IMG OID644795591 
Productputative transcriptional regulator 
Protein accessionYP_002946866 
Protein GI239817956 
COG category[K] Transcription 
COG ID[COG2345] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCACGC GCCCGCTCGA CGCCAAGCCC GGCTGGATGC CGCACCAGCC GGCGGACCGC 
ATCCTGTCCA CGCTCAAGAC CCGTGGCGCG CTCGGCATTC CCGACATCGC CAAGGTGCTC 
GACGTCACGG TGGAGGCCGT GCGCCAGCAG ATGGCCAAGC TGCAGGCCGA GGGCCTGGTC 
GATGCCGAGA GCCGCCCGGC GGGCCGCGGC AGGCCCACGC AGATATGGCG CCTCACCGGC 
GCCGGCCACG CGCGCTTTCC CGACACGCAC GCCGAGATGA CGGTGCAGAT GATCAGCGCC 
GTCATCAGCG TGTTCGGCGA GAAGGGCATG GACCGGCTCA TCGGCGCGCG CGAGGAGGCC 
ATGCGCACCA ACTACCGCGA GGCCATGCGC GGCGCGCGCA GCCTGAAGAA CAAGCTCGAG 
CGGCTGGCCG AAATCCGCAG CCGCGAGGGC TACATGGCCG AGCTGCGGCC CGAGGGCGAC 
GGCTTCCTCT TCATCGAGAA CCATTGCCCC ATCTGCACCG CGGCGCGCGC CTGCACCGGC 
TTTTGCCGCA GCGAGCTCCA GCTCTTCGAC GAAGTGCTGG GCCCCGGCGT GAGCGTGAGC 
CGCGTCGAGC ATGTGCTCGC CGGCGCGCGG CGCTGCGCCT ACCAGGTGAG CCCGAAGAGC 
GCGCCCTGA
 
Protein sequence
MTTRPLDAKP GWMPHQPADR ILSTLKTRGA LGIPDIAKVL DVTVEAVRQQ MAKLQAEGLV 
DAESRPAGRG RPTQIWRLTG AGHARFPDTH AEMTVQMISA VISVFGEKGM DRLIGAREEA 
MRTNYREAMR GARSLKNKLE RLAEIRSREG YMAELRPEGD GFLFIENHCP ICTAARACTG 
FCRSELQLFD EVLGPGVSVS RVEHVLAGAR RCAYQVSPKS AP