Gene Vapar_4991 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4991 
Symbol 
ID7974273 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5302807 
End bp5305569 
Gene Length2763 bp 
Protein Length920 aa 
Translation table11 
GC content73% 
IMG OID644795585 
ProductOsmosensitive K channel His kinase sensor 
Protein accessionYP_002946860 
Protein GI239817950 
COG category[T] Signal transduction mechanisms 
COG ID[COG2205] Osmosensitive K+ channel histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGACA TTCCCCGCCC CGACCCCGAC GCATTGCTCG CGCAACTGCG CAGCGACGAG 
GCGCGCGCAC TGCGCGGCAA GCTGCGCATC TATTTCGGCG CGAGCGCGGG CGTCGGCAAG
ACCTGGGCCA TGCTGAGCGC CGCGCAGCGC GAACGTGCCG CGGGGCGCGA CGTGCTCATC
GGCGTGGCCG AAACCCATGG CCGCAGCGAA ACTGCGGCAC TGCTCGCGGG GCTCGAGTTG
CTGCCGCTGC GCGAGGTGGA CCACCGCGGC CGCAGGCTGG CCGAATTCGA TCTGGATGCC
GCCCTCGCGC GCAAGCCCGC CGTGCTGCTG GTCGATGAAC TGGCCCACAC CAATGCGCCC
GGCTCGCGCC ATGCCAAGCG CTGGCAGGAC GTGCAGGAAC TGCTGGCCGC GGGCATCGAG
GTGTGGTCGG CGCTCAACGT GCAGCACCTG GAAAGCCTCA ACGGCACGGT CGGCGCCATC
ACCGGCGTGC GGGTGCACGA GACCGTGCCC GACACCGTGC TCGACGAAGC CGACGAGGTG
GTGCTGGTCG ATGTCACGCC CGACGAACTC GCGGCGCGGC TCGCGGCGGG CAAGGTCTAC
CTGCCCCAGC AGGCCGAGCG CGCTGCGCAG AATTTCTTCC GCAAGGGCAA CCTGATCGCG
CTGCGCGAGA TTGCGCTGCG CCGCACCGCC GAGCATGTGG AAGACGACGT ACGCGGCTGG
CGCGTCGAGC AGTCGGGCGC GGCCGGCCGC AATGGAAAGG ACGGGCAGGG CGGCGAACTG
CAGGCCTGGA ACACCTCGGG CGCGATCCTC GCGTGCGTCG GGCCGCACGA GGGCGACGCG
CAGACGGTGC GCACCGCCGC GCGGCTCGCG GGCCAGCTCA ACGTGCGCTG GCATGCCGCG
TACGTCGAGA CGCCGCGGCT GCAGCGGCTC GCCGCCGAGG AGCGTGACCG CATCCTCGCG
GTGCTCAAGC TGGCCGAGGA GCTGGGCGCG GCCACCGCGG TGCTCACCGG TTCCGACGTG
GCCGAGCAAC TGGCTGAACA GGCGCGGCGG CTCAACTGCG CCACGCTGGT GCTGGGGCAA
CCGGAGCCGG CCACCGGCTG GCGCCGCTGG TGGCCCGCCA CGCCGATGCC GCTGCCGCGC
GCGCTGGCCC GGCGCGCGCC CGCGCTCGAC ATCATGGAAG TCGGCCGCGC CGACAGCTCG
CGCCGCTTGT CGCGCGCGCC CATCGCCGCC ACGCGCGCCG ACGACGACGA CCACGAGAAG
GCACCCGTCC ACTGGCCGGG CTACGCCTGG GCCACGGCCG CGAGCATCGC GCTCACGCTG
TTGTGCACGC CGCTGGCCCA TGTGCTGGAG CTGTCCAACA TCGTGATGCT GTTCATGCTG
GGCGTGGTGG GCGTGGCCAT GCGCTTCGGC CGTGGACCCT CGGCGCTCGC GGCGCTGCTC
AACGTGGCGG CGTTCGATTA TTTCTTCGTG CCGCCGCGCC TGTCGTTCGC GGTGAGCGAC
GTGCAGTACG TGCTGACCTT CGCGATCATG CTCGGCGTGG GCCTGCTCGT GGGCCAGCTG
ATGGCGGGGC TGCGCTTTGC GGCCGGCGTG TCGACCAGCC GCGAGCGGCG CGCGCGCTCG
CTGTTCGAAC TCACGCGCGA GCTCTCGGCC GCGCTGGAGA GCACGCAGGT GGTGGCGCTG
GGCGCAGCCG CCGTGCAGGG GCACTTCGGT GGCCAGGCGC TGGTGCTGGT CACCGATGCG
GCCGACCAGC TCGTGCTGCC CAAGAGCCCG CCGGAGGGCT TCGATGCGCA GGTGGCCGAC
TGGGCCTTTC GCCACGGCCA GCCCGCCGGC CTGGCCACCG CCACGCTGGC GGCGCAGCCC
TGGCATTACG TGCCGCTGCA GGCACCGATG CGCGTGCGCG GCGTGCTTGC GCTCTCGCCG
GCGCAGCCGC GCTGGCTGCT GATTCCGGAG CAGGCGCAGC AGCTCGACAC GCTGGCGCGG
CAGATCGCGA TTGCGCTGGA GCGCGTGCAC TACGTGGAGG TGGCGCAGCA GGCGGTGGTC
GAGATGGAAT CGGAGCGCCT GCGCAACGCG CTGCTCGGCG CCATCTCGCA CGACGTGCGC
ACGCCGCTCA CCGCTTTGAT TGCGCTGGCC GAGTCATTGC AGACGCTGCC GCCCGAGGCG
CACGCCGAGG CGGCGCGCGC CATCGTCGCG CAGGCGCACG AGCTGCATGC GCTGGTCAAC
AACCTGCTCG ACATGGCGCG GCTCGAAAGC GGCATTGCGG GCGGTGCGGT GAACCTGCGG
CGCGACTGGC AGTCGGTGGA AGAGGTGGTC GGTTCGGCCA TCCGCGCGGC GCGCCCCGCG
CTCGGCCCTG CCGTGGTGCA GACCGCGCTC GAGCCCGGGC TTCCGCTGGT CGAGTTCGAT
GCCGTGCTGA TCGAGCGCGT GCTGGTCAAC CTGATCGAGA ACGCCACCAA GTACGGCGCG
CCGCCCATCG TGGTCGGCGC ACGGGCCGAG CCCGGCATGC TGAGGCTCAC GGTGCGCGAC
CACGGCCCGG GTCTGCCCGC CGCACTCTTG GGCCGCGAGC AGAAGCTGTT TGACAAGTTC
ACGCGCGGCG AAACCGAATC GGCCACGCCG GGCGTGGGCC TGGGCCTCGC GATCTGCCGC
GCGGTGGTGA GCGCGCACGG CGGCGAGATT GCCGCGGCCA ATGCGCAGGG CGGCGGTGCA
GAATTCACGG TCAGCCTGCC GCGCCGCGAG CCGCCGGAAA CCGCCGAAGA AGCCCAGCCC
TGA
 
Protein sequence
MSDIPRPDPD ALLAQLRSDE ARALRGKLRI YFGASAGVGK TWAMLSAAQR ERAAGRDVLI 
GVAETHGRSE TAALLAGLEL LPLREVDHRG RRLAEFDLDA ALARKPAVLL VDELAHTNAP
GSRHAKRWQD VQELLAAGIE VWSALNVQHL ESLNGTVGAI TGVRVHETVP DTVLDEADEV
VLVDVTPDEL AARLAAGKVY LPQQAERAAQ NFFRKGNLIA LREIALRRTA EHVEDDVRGW
RVEQSGAAGR NGKDGQGGEL QAWNTSGAIL ACVGPHEGDA QTVRTAARLA GQLNVRWHAA
YVETPRLQRL AAEERDRILA VLKLAEELGA ATAVLTGSDV AEQLAEQARR LNCATLVLGQ
PEPATGWRRW WPATPMPLPR ALARRAPALD IMEVGRADSS RRLSRAPIAA TRADDDDHEK
APVHWPGYAW ATAASIALTL LCTPLAHVLE LSNIVMLFML GVVGVAMRFG RGPSALAALL
NVAAFDYFFV PPRLSFAVSD VQYVLTFAIM LGVGLLVGQL MAGLRFAAGV STSRERRARS
LFELTRELSA ALESTQVVAL GAAAVQGHFG GQALVLVTDA ADQLVLPKSP PEGFDAQVAD
WAFRHGQPAG LATATLAAQP WHYVPLQAPM RVRGVLALSP AQPRWLLIPE QAQQLDTLAR
QIAIALERVH YVEVAQQAVV EMESERLRNA LLGAISHDVR TPLTALIALA ESLQTLPPEA
HAEAARAIVA QAHELHALVN NLLDMARLES GIAGGAVNLR RDWQSVEEVV GSAIRAARPA
LGPAVVQTAL EPGLPLVEFD AVLIERVLVN LIENATKYGA PPIVVGARAE PGMLRLTVRD
HGPGLPAALL GREQKLFDKF TRGETESATP GVGLGLAICR AVVSAHGGEI AAANAQGGGA
EFTVSLPRRE PPETAEEAQP