| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4990 |
|---|
| Symbol | |
|---|
| ID | 7974272 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5302110 |
|---|
| End bp | 5302802 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644795584 |
|---|
| Product | two component transcriptional regulator, winged helix family |
|---|
| Protein accession | YP_002946859 |
|---|
| Protein GI | 239817949 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCGC CCACCGCCAT CGTGATCGAG GACGAGCCGC AGATCCGCCG CTTCGTGCGC
GGCGCGCTCG AGGCCGAGGG CTGGCTGGTG CACGAGGCCG GCACGCTGCG CGAGGGCCTG
GCGGCGGCCG GCACGCGCCA GCCCGACCTG CTGGTGCTCG ACCTCGGCCT GCCCGATGGC
GACGGCGTGT CGCTGATCCG CGATGTGCGC GGCTGGTCGG CCGTGCCGAT CATCGTGCTG
TCCGCGCGCA GCGACGAGGC CGACAAGATC GCCGCGCTCG ATGCCGGCGC CGACGACTAC
CTGACCAAGC CCTTCGGCAC CGGCGAACTG CTCGCGCGCG TGCGCGCCAA CCTGCGCCGG
CCACGCGCGG CGGGCGGCGA CGAAGCGGCA GAAGCGGTGT TCCGCTTCGG CGAGGTCGAG
CTGGACCGCG CCGCGCGCAT CGTGCGCCGG GCCGGCGCCG AGGTGCATCT GACGCCGACC
GAGTACCGGT TGCTGTCAGT GCTCGTCGCC AACGCCGGCC GCGTGCTCAC GCAGCGCCAG
CTTCTGCGCG AGGTGTGGGG GCCGTCGCAC ACGGACCAGA GCCACTATCT GCGCATCTAC
ATGGGGCATC TGCGGCAGAA GCTGGAAGCG GATCCGGCGC AGCCGCGGCA TTTGTTGACG
GAGACTGCGG TGGGGTATCG GCTGGTGGTT TAG
|
|---|
| Protein sequence | MPSPTAIVIE DEPQIRRFVR GALEAEGWLV HEAGTLREGL AAAGTRQPDL LVLDLGLPDG
DGVSLIRDVR GWSAVPIIVL SARSDEADKI AALDAGADDY LTKPFGTGEL LARVRANLRR
PRAAGGDEAA EAVFRFGEVE LDRAARIVRR AGAEVHLTPT EYRLLSVLVA NAGRVLTQRQ
LLREVWGPSH TDQSHYLRIY MGHLRQKLEA DPAQPRHLLT ETAVGYRLVV
|
|---|
| |