| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4980 |
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| Symbol | |
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| ID | 7974262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5293050 |
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| End bp | 5293766 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795575 |
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| Product | MIP family channel protein |
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| Protein accession | YP_002946850 |
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| Protein GI | 239817940 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
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| TIGRFAM ID | [TIGR00861] MIP family channel proteins |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0631888 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACATA GCACCTACAA AAAGTGGTCG GCCGAGTTCA TTGGTACTTT CTGGCTCACG
CTGGGCGGCT GCGGAAGCGC GGTGCTGGCG GCGGCCTTTC CCAACAACCT GGGCATCGGC
TTCCTGGGCG TCTCGCTGGC GTTCGGCCTC ACGGTGGTGA CCGGTGCCTA TGCGCTCGGC
CCCATCTCGG GCGGCCACTT CAATCCCGCG GTGTCGATCG GCCTCGCGGC CGCGGGGCGC
TTCAAGGCCT CGCAGCTCGC GGGCTACATC GTCTCGCAGG TGCTGGGTGC AATTGCCGCG
GCCGGCGTGC TCTACCTGAT TGCCACCGGC AAGCCCGGCG CCGACATCGG CGGCTTTGCC
ACCAACGGCT TCGGCGAGCA CTCGCCCGGC AAGTACGGCA TGACCGCCGC GCTGGTGTGC
GAGGTGGTGA TGACCGCGGT GTTCCTGATC GTGATCCTCG GCGCCACCGC CAAGCGCGCC
GCCGGCGGCT TCGCGGGCCT GGCCATCGGC CTGTGCCTCA CGCTGATCCA CCTGATCTCC
ATTCCGGTCA CCAACACCTC GGTGAACCCC GCGCGCAGCA CGGGCCCGGC GCTGTTCGGC
CCGTCCTACG CGGTGTCGGA GCTGTGGCTG TTCTGGGTTG CGCCCATCGC GGGCGCGATC
ATCGGCGCGC TGATCTACCG CGCGCTGCTC GCGAACAGCG ACGCGACGAC TGACTGA
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| Protein sequence | MEHSTYKKWS AEFIGTFWLT LGGCGSAVLA AAFPNNLGIG FLGVSLAFGL TVVTGAYALG
PISGGHFNPA VSIGLAAAGR FKASQLAGYI VSQVLGAIAA AGVLYLIATG KPGADIGGFA
TNGFGEHSPG KYGMTAALVC EVVMTAVFLI VILGATAKRA AGGFAGLAIG LCLTLIHLIS
IPVTNTSVNP ARSTGPALFG PSYAVSELWL FWVAPIAGAI IGALIYRALL ANSDATTD
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