| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4973 |
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| Symbol | |
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| ID | 7974255 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5285031 |
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| End bp | 5286182 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795568 |
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| Product | L-carnitine dehydratase/bile acid-inducible protein F |
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| Protein accession | YP_002946843 |
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| Protein GI | 239817933 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.367735 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAACC CCCAAGGCGC CCTCGCAGGC ATCCGCGTCC TCGACATCTC GCGCATCCTC
GGCGGCCCCT ACTGCGGCCA GATCCTTGGC GACCACGGTG CCGACGTGCT CAAGGTCGAG
CCGCCGCAGG GCGACGACAC GCGCACCTGG GGCCCGCCCT TCAAGGACGG CGTGGCCTCG
TACTACCACG GCCTGAACCG CAACAAGCGC GTGCAGCATC TCGACTTTTC CACGGACGAA
GGCCGCGAGG CACTGCTCGC GCTCGTGGCC GAAGCCGACG TGCTGATCGA GAATTTCAAG
ACCGGCACCA TGGAGCGCTG GGGCATCGGC TACGAGGCGC TTTCCGCGCG CTTTCCACGC
CTCGTCTGGT GCCGCGTCTC GGGCTTCGGC GCCGATGGCC CGCTGGGCGC GCTGCCCGGC
TACGACGCCG CCGTGCAGGC CATGACCGGC ATCATGAGCA TCAACGGCGA AGCCGACGGC
GGCCCGCTGC GCGTGGGCCT GCCGGTGGTC GACATGGTGA CCGGGCTCAA TGCGGTGATC
GGCGTGCTGC TCGCGCTGCA GGAGCGCAAC CGCAGCGGCC GCGGGCAGTT CGTGGAGGCC
GCGCTGTACG ACAGCGGGCT CTCGCTGCTG CATCCGCATG CGGCCAACTG GTTCATGGAT
GGCACCGAGC CGCGCCGCAC CGGCAACGCG CATCCCAACA TCTATCCCTA CGACGCGCTG
GCCACCGGCA CCGACCCGGT GTTCGTGGCG GTGGGCAACG ACCGCCAGTT CGCGAGCCTG
TGCCGCTGCA TCGGCCTGCC CGCGCTGGCC GACGATCCGC TCTACCGCAC GGCCGGCGCG
CGCTCGGTGC ACCGTGCGGG GCTCAAGCAG CAGCTGGAAG CGGCCATGGC GGCGTTCGAC
GGCCGTGCGC TGGTCGAGCA GCTGATGGCC GCGGGCGTGC CGGCCGCACC GGTGCTGCCG
GTGGATGCGG CGCTCGAGCA TCCGCACACG GCGCACCGCG AAATGGTGGT GGAAATGGAA
GGCGGCTACC GCGGCATCGG CGCGCCGGTG AAGCTCAGCC GCACGCCGGC GAGCTACCGG
CACGCGCCGC TCACGCCGGG CGAGCGCTTC CTGCCCGATG CCGCGGCCGG CACTGGCGCC
AGCGGCTCAT AG
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| Protein sequence | MTNPQGALAG IRVLDISRIL GGPYCGQILG DHGADVLKVE PPQGDDTRTW GPPFKDGVAS
YYHGLNRNKR VQHLDFSTDE GREALLALVA EADVLIENFK TGTMERWGIG YEALSARFPR
LVWCRVSGFG ADGPLGALPG YDAAVQAMTG IMSINGEADG GPLRVGLPVV DMVTGLNAVI
GVLLALQERN RSGRGQFVEA ALYDSGLSLL HPHAANWFMD GTEPRRTGNA HPNIYPYDAL
ATGTDPVFVA VGNDRQFASL CRCIGLPALA DDPLYRTAGA RSVHRAGLKQ QLEAAMAAFD
GRALVEQLMA AGVPAAPVLP VDAALEHPHT AHREMVVEME GGYRGIGAPV KLSRTPASYR
HAPLTPGERF LPDAAAGTGA SGS
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