| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4970 |
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| Symbol | |
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| ID | 7974252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5280971 |
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| End bp | 5281867 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644795565 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002946840 |
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| Protein GI | 239817930 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.126085 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACTGC GACACCTGCG CTACTTTTCC GTGCTGGCCG AGGAGCTGCA CTTCGGGCGC
GCCGCGCGGC GCCTGTCGAT CTCGCAGCCG CCGCTGTCGG TGGCGATCCG CCAGCTCGAG
GAGTCGGTGG GCGCGCGGCT GTTTGAGCGC AACAGCAAGG AGGTGCGCCT CACGCATGCG
GGCGAGGCGC TGCGCATCTC GGCGCGGCGG CTGCTGCTGC AGGCGGAAGA GGCGGCACTC
GAAGCACGCG ACGTGGCCGC AGGCTCGGCG GGGCGGCTGC GCATCGGCTT CGTCGGCGCG
ATGCTCTACC GCGGCCTGCC GCAGGCGCTG CGCGCGTTCC AGGCAAGGCA CCCGGCGGTG
CGCATCACGC TCGCCGAACT CAATTCGGGC GTGCAGATCG CCGAGCTGCT GCACGACCGG
CTCGACCTGG GCTTCGTCCA CACCAGCCGC ATGCCGCCCG AGCTGCAGCA CCGGCTGCTG
CTGTCCGAGC CTTTCGTGTG CTGCCTGCCC TCGGGCCACG CGCTCGCGCG CAAGCGCGTG
CTCGCGCCGG CCGACCTGCG CAGCCAGCCC TTCGTGCTGT TCTCGCGCGA AGCCTCGCCC
GACTACCACG AGCGCATCCT GTCGATCTGC GCCGACGCCG GCTTCCTGCC CGAGGTGCGG
CACGAGGTGC GCCACTGGCT CGCAGTGGTC TCGCTGGTGT CCCAAGGCAT GGGCGTGGCG
CTGGTGCCGC AGGCCATGCG GCATTCGGCC CTGCGCGGCG CGGTGTTCCG GCCGCTCGAC
CGCGCGGTGG CGCAATCGGA GGCGCATGGC GTGTGGCGCA GCGGGCCGCC GAACGTGCTG
GCCGAACGGC TGCTGCAGGG CGTGGCGGAA AGCCTCGCGG CCGAAGCGGC GTCCTAA
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| Protein sequence | MELRHLRYFS VLAEELHFGR AARRLSISQP PLSVAIRQLE ESVGARLFER NSKEVRLTHA
GEALRISARR LLLQAEEAAL EARDVAAGSA GRLRIGFVGA MLYRGLPQAL RAFQARHPAV
RITLAELNSG VQIAELLHDR LDLGFVHTSR MPPELQHRLL LSEPFVCCLP SGHALARKRV
LAPADLRSQP FVLFSREASP DYHERILSIC ADAGFLPEVR HEVRHWLAVV SLVSQGMGVA
LVPQAMRHSA LRGAVFRPLD RAVAQSEAHG VWRSGPPNVL AERLLQGVAE SLAAEAAS
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