| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4965 |
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| Symbol | |
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| ID | 7974247 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5276656 |
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| End bp | 5277501 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644795560 |
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| Product | ABC-2 type transporter, NodJ family |
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| Protein accession | YP_002946835 |
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| Protein GI | 239817925 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
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| TIGRFAM ID | [TIGR01291] ABC-2 type transporter, NodJ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.285071 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACGA CGACTGCAAG TTCTTCATCT TCTGCCGCGC CATCGCCGCC GGCCCGTTCC
GTGTGGCGCG CGCCCGAGCT CTCGCTGCGC TGGTGGCCCG TGTTCCTGCG CAACCTCCTG
GTGTGGCGCA AGCTCGCGAT TCCCAGCCTC ATCGGCAACA TCGCCGAGCC GCTGATCTGG
CTCGTGGCCT TCGGCTACGG CATGGGCGCC CTGGTCGGCG AGGTGTCGGT CGACGGAACC
CGCGTGCCCT ACATCCTGTT CCTCGCGAGC GGCTCGATCT GCATGAGCGC GATGAACGCC
GCGAGCTTCG AGGCGCTGTA TTCGGCGTTC TCGCGCATGC ACGTGCAGAA GACCTGGGAC
GGCATCATGA ACGCGCCGGT CGGCCTGGAC GACATCGTGC TGGCCGAGAT GCTGTGGGCC
GCGTTCAAGT CGATCTTTAC CGTCACGGCG ATCCTGTTCG TGATGCTCGG CCTGGGGATC
AGCCACAGCC CCAAGCTGAT CGTCGCGTGG ACGGTGCTGA TCGGCGCGGG GATCACCTTC
TCGTCGATTG CACTGATCTT CAATGCGCTC GCGAAGGGGT ACGACTTCTT CACTTATTAC
TTCACGCTGT TCATGACGCC GATGATGTTC CTGAGCGGCG TGTTCTTTCC GCTCGAGCAG
TTGCCTTCCG CCGTGAGGGC CGTGGCGGCG TGGCTGCCGC TGACCAATGC GGTGGCGCTG
GTGCGGCCGC TGTTCATGGA TCAGTGGCCT GGCGGGTGGT GGGTGCATGC GGGGGTGCTG
GTGGTTTATG GGGTTGTTTC TTTTTGGGTG GCGTTGGCTT TGACTCGGAA GAGGTTTCGG
GGGTAG
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| Protein sequence | MNTTTASSSS SAAPSPPARS VWRAPELSLR WWPVFLRNLL VWRKLAIPSL IGNIAEPLIW
LVAFGYGMGA LVGEVSVDGT RVPYILFLAS GSICMSAMNA ASFEALYSAF SRMHVQKTWD
GIMNAPVGLD DIVLAEMLWA AFKSIFTVTA ILFVMLGLGI SHSPKLIVAW TVLIGAGITF
SSIALIFNAL AKGYDFFTYY FTLFMTPMMF LSGVFFPLEQ LPSAVRAVAA WLPLTNAVAL
VRPLFMDQWP GGWWVHAGVL VVYGVVSFWV ALALTRKRFR G
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