| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4957 |
|---|
| Symbol | |
|---|
| ID | 7974239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 5268334 |
|---|
| End bp | 5269851 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644795552 |
|---|
| Product | AMP nucleosidase |
|---|
| Protein accession | YP_002946827 |
|---|
| Protein GI | 239817917 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0775] Nucleoside phosphorylase |
|---|
| TIGRFAM ID | [TIGR01717] AMP nucleosidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTACA TGCCCACTTT CGTCGCTCCC GCCCGCTTCA ACGACGCCGC CGCCGCACTC
GAACAGGTCA AGTCCATCTA CCAGGGGGGC CTCGCACACC TGCGCGAATC GATGCTGCGC
TTCGTGGCCG GGGAGGCGCT GCCGGGCCGG GTGCGGGCCT GCTACCCGTT CGTGCGGGTG
CACACGCACA CCGTGTCGCG CCACACGCCG CCGGCCAACG CGGGGCTGAG CTACGGCTTC
GTCGCCGGGC CGGGCCGCTA CGAGACCACG CTGACGCGGC CCGACCTGTT CTCGCGCTAC
TACCTCGACC AGTTCCGCCT GCTGCTGGAA AACCACCAGG TCGAGATCGA GGTGGGCACC
AGCACGCAGC CGATTCCCAT CCACTTCTCC TTTGCCGAGA ACGACCACAT CGAAGGCACG
ATGAGCGAGG AGCGCCGCGC GCTGATGCGC GACGTGTTCG ACCTGCCCGA CCTGGGCGTG
ATGGACGACG GCATTGCCAA CGGCACCTAC GAGGCGCTGG CGGGCGAGGC GCAGCCGCTG
TCGCTCTTCA CCGCCGCGCG CGTGGACTAT TCGCTGCACC GGCTGCGGCA CTACACCGGC
ACCGCGCCCG AGTGGTTCCA GAACTTCGTG CTGTTCACCA ACTACCAGTT CTACATCGAC
GAGTTCGTGC GGCTGGGCCA CGAGGCCATG GCCGACGAGA AGAGCGAGTA CGTCGCCTTC
ATCGAGCCCG GCAACGTGGT CACGCGCCGG CGCGGGCTGG CCGCGGGCGC CAGCACCAAC
TACGGCGGCC TGCTCGACGG CAGCCAGGGC ACGGCGCCGC CGCGCCTGCC GCAGATGCCG
GCCTACCACC TGGTGCGCGA GGACTGCAGC GGCATCAGCA TGGTGAACAT CGGCGTCGGT
CCGGCGAATG CCAAGACCAT CACCGACCAC ATCGCCGTGC TGCGCCCGCA TGCCTGGATG
ATGCTGGGCC ACTGCGCGGG CCTGCGCAAC GCGCAGCAGC TCGGCGACTA CGTGCTGGCG
CATGCGTATG TGCGCGAGGA CCACGTGCTC GACGAGGAAC TGCCGCTGTG GGTGCCGATT
CCGGCGCTCT CGGAGATCCA GCTCGCGCTG GAAAAGGCGG TGGCCGACGT CACGCGCTAC
ACCGGCCCGG ACCTCAAGAA GATCATGCGC ACCGGCACGG TGGCGAGCAC CGACAACCGC
AACTGGGAGC TGCTGCCGGG CAACCAGCCG CAGCGCCGCT TCAGCCAGAG CCGGGCCGTG
GCGCTCGACA TGGAAAGCGC CACCATCGCG GCCAATGGCT TCCGCTTTCG CGTGCCCTAC
GGCACTTTGT TGTGCGTGAG CGACAAACCG CTGCACGGCG AGATCAAGCT GCCGGGCATG
GCCAACCACT TCTACCGCGA GCGCGTGGAG CAGCATCTGC GCATCGGCAT GCGGGCCATC
GACATCCTGC GCGAGCAGGG TTCGACCCGG CTGCACAGCC GCAAGCTGCG CAGCTTCGCG
GAGGTCGCGT TCCAGTAA
|
|---|
| Protein sequence | MPYMPTFVAP ARFNDAAAAL EQVKSIYQGG LAHLRESMLR FVAGEALPGR VRACYPFVRV
HTHTVSRHTP PANAGLSYGF VAGPGRYETT LTRPDLFSRY YLDQFRLLLE NHQVEIEVGT
STQPIPIHFS FAENDHIEGT MSEERRALMR DVFDLPDLGV MDDGIANGTY EALAGEAQPL
SLFTAARVDY SLHRLRHYTG TAPEWFQNFV LFTNYQFYID EFVRLGHEAM ADEKSEYVAF
IEPGNVVTRR RGLAAGASTN YGGLLDGSQG TAPPRLPQMP AYHLVREDCS GISMVNIGVG
PANAKTITDH IAVLRPHAWM MLGHCAGLRN AQQLGDYVLA HAYVREDHVL DEELPLWVPI
PALSEIQLAL EKAVADVTRY TGPDLKKIMR TGTVASTDNR NWELLPGNQP QRRFSQSRAV
ALDMESATIA ANGFRFRVPY GTLLCVSDKP LHGEIKLPGM ANHFYRERVE QHLRIGMRAI
DILREQGSTR LHSRKLRSFA EVAFQ
|
|---|
| |