Gene Vapar_4954 details

Gene Information

• Locus tag: Vapar_4954
• ID: 7974236
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 5263956
• End bp: 5265875
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644795549
• Product: putative chromosome segregation ATPase
• Protein accession: YP_002946824
• Protein GI: 239817914
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3064] Membrane protein involved in colicin uptake

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.459285
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCGCC CCGCCTTTCT CGATCTTCAC CGGCCATGGC ACCGATGGCT GTTCGGCCTC 
GCGCTGCTGT GCCTCGGTGC GGCGGCCAGC GCGCAGCAGG ACCCGCCGGG ACGCGTGGCG 
CGCCTGAACC TGCAGCAGGG CACCGTGAGC TTCGCGCCCG CCGGCGAAGA CAGCTGGTAC 
GACGCGCAGC CCAACCGCCC CATCACCACC GGCGACCGGC TCTGGACCGA CCGCAATGCG 
CGCGCCGAAG TCCACATCGG CTCGGCCGCG CTGCGCATGG ACGGGCAGAC GCACATCGAA 
TTCTCCGAAC TCGACGACGA CACCGTGCGC CTCACCGCGA ACCAGGGCAA CCTGCAGCTG 
CGCGTGCGTG ACGAGCTGGC GGGCCAGCGT GTCGAGGTGG ACACCGGCAA CCTCGCGGTC 
GTGATCGACG CGCCCGGCGA ATACCGCGTG GCGGCCGACC CCGCCGCCGG CACCACCTGG 
ATCGCAGTGG CTTCGGGCCA TGTCACGCTG CATGGCGAGA ACGGCGAATC GCAAGCGCTG 
GGTGCGCGGC AGCAGCTCAC CGTGTCGGGC CGCAACCTGG CCGCGGTGGG CGGCGCGCCG 
GCGCAAAGCG GCAGCTTCGA TGCCTGGGTG GCCGAGCGCA ACCGCATCGA AGACCAGTCG 
ATCTCCGCAC GCTACGTGTC GCGCGAGGTC GTGGGCTACC AGCAGCTCGA CGCCTACGGC 
GACTGGCAGA GCGACCCGAA CTATGGCGAT GTCTGGTTCC CGCGCAGCGT GGATGCCGAC 
TGGGCGCCCT ACCGCGACGG CCAGTGGGTC AACATCGCGC CCTGGGGCCT GACCTGGGTC 
GACGCCGCGC CCTGGGGCTT TGCGCCTTTC CACTATGGCC GCTGGGCGCG CCTGGGACCG 
CGCTGGGCCT GGGTGCCGGG GCGGCCGGCC GCACGGCCCG TGTACTCGCC CGCGCTGGTC 
GGCTTCGTGG GCGGCGGCGG CGCCAATGCC GCCTTGCAGA TCGGCAACGG CCGCAGCGGC 
GTGGGCTGGT TCCCGCTGGC CCCCGGCGAG GCATGGCGGC CCGGCTATGA CGCGAGCCAG 
CGCTACCTCG ACCAGGTGAA CCGCATGGCG GCCTACCGCA ACCGCCAGGC CGAGCTGCGC 
AACGGCTTCT ATGCCAACCA GCAGATGGCG GGCGCCGTGA CCGTGCTGCC GGCCGACCGC 
TTCGGCCGCG GCCCCTTCGG CCGGCGCGAC CTGGTGCGGC TGCCGGACGA CCGCTTCGCG 
CGGGTGCCGG TGGCGCCGGC GCCGGGCGTC CCGATGCAAG GCTTCGGCGG CGGCTTCGGC 
CGGCCGGCCG CTGCGCTGCC GCCGACGCAG CTGATGGCGC GCGAACAGCA GGAACTGCGC 
TACGAGCAGG CACGGCGAAC CCAGCAGTTG CAGCAGGCGC AGGCGCTCCA GCAACAACAG 
CAGCCAATGG AATGGCAGCG CCAGCAGGGC TTGCGCCAGC AGCAGGAGTG GCAGCAGCGC 
GGCGCGCATG ACCAGTGGCA ACAGCAACGC CAACAGCAGC AGCAGTTGCA GGTCCAGCAA 
CAGCAGCAAC AGGTGCTGCG GCAGCAGCAG GAGGCGCAGC AGCGCGCCGC CCAGGCGCAA 
GCCCTGCAGC AGCAACAACA AATGCAGCAG ATGCAGCAGC AACAGCGCGC GGCGCAGCAG 
CAGGCATTGG CCCAGCAACA GATGCTGCGC CAGCAGCAGG AGATGCAGCA ACGCGCCGTG 
CAGGCGCAAC AGCAGGCCCA GCAGAACGCG ATGCGCCAGG CGCAGGAAGC GCAGGTGCGC 
GCCCTCCAGC AGCAGCGCGG CTTCGCGCCT GCACCGTCAC CGCAGCCGCC GCCGGTTCAG 
CCGGGCCAGC GCGGCGGCGA TGACCGGCGC AGGTTGATGA CCTCTCCGGA CCAGCGCTGA 

 

Protein sequence

MNRPAFLDLH RPWHRWLFGL ALLCLGAAAS AQQDPPGRVA RLNLQQGTVS FAPAGEDSWY 
DAQPNRPITT GDRLWTDRNA RAEVHIGSAA LRMDGQTHIE FSELDDDTVR LTANQGNLQL 
RVRDELAGQR VEVDTGNLAV VIDAPGEYRV AADPAAGTTW IAVASGHVTL HGENGESQAL 
GARQQLTVSG RNLAAVGGAP AQSGSFDAWV AERNRIEDQS ISARYVSREV VGYQQLDAYG 
DWQSDPNYGD VWFPRSVDAD WAPYRDGQWV NIAPWGLTWV DAAPWGFAPF HYGRWARLGP 
RWAWVPGRPA ARPVYSPALV GFVGGGGANA ALQIGNGRSG VGWFPLAPGE AWRPGYDASQ 
RYLDQVNRMA AYRNRQAELR NGFYANQQMA GAVTVLPADR FGRGPFGRRD LVRLPDDRFA 
RVPVAPAPGV PMQGFGGGFG RPAAALPPTQ LMAREQQELR YEQARRTQQL QQAQALQQQQ 
QPMEWQRQQG LRQQQEWQQR GAHDQWQQQR QQQQQLQVQQ QQQQVLRQQQ EAQQRAAQAQ 
ALQQQQQMQQ MQQQQRAAQQ QALAQQQMLR QQQEMQQRAV QAQQQAQQNA MRQAQEAQVR 
ALQQQRGFAP APSPQPPPVQ PGQRGGDDRR RLMTSPDQR