| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4952 |
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| Symbol | |
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| ID | 7974234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5259779 |
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| End bp | 5261698 |
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| Gene Length | 1920 bp |
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| Protein Length | 639 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795547 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_002946822 |
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| Protein GI | 239817912 |
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| COG category | [G] Carbohydrate transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.288841 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCGAAC CCGCACTCGG CCTCTCGATG CTGGGCCTGA TCGTGGTCGT GATCATGCTG
GGCTTTCCCA CGGCGTTCAC GCTGATGGGC CTGGGCATGT TCTTCGGCTT CATCGCCTTC
TACGATCCCG CCGCGCACTG GCTGGACAAC AGGATCTTCG ACCTGATGGT GCAGCGCGCC
TTCGGTGCCA TGACCAACGA GACGCTGCTG TCGATCCCGC TGTTCGTGCT GATGGGCTAC
GTGATGGAGC GCGGCGCGCT GGTCGACAAG ATGTTCCACA GCGTGCAGCT GGCCTTCCGC
CGAGTGCCGG GGTCGCTGGC GGTGACCACG CTGATCGTCT GCACCTTCTG GGGCATCGCG
AGCGGCCTGG TCGGCGCGGT GGTGGTGCTG ATGGGCGTGA TCGCGATGCG GCCGATGCTC
AACGCCGGCT ACGACACGCG GCTGGCGGCC GGCGTCATCA CGGCGGGCGG CACGCTCGGC
ATCCTGATTC CGCCCTCGGT GATGATCATC GTGTACGCGG CCGTGGCCGG GCAGTCGGTG
GTCAAGCTCT ATGCGGCGGC GATGTTCCCG GGCTTCTTCC TCGCCTTTCT CTACCTGGTC
TACGTGATCG GCTGGGCCAT GCTGCAGCCG AAGGTCGCGC CCAAGCTGCC CGCCGACCAG
CAGCGCGCCC CCGTCTCGCC CTGGGTTGCG CACATCGCGG CCAGCTATTC GCCGCGCATG
CTGCCCGCGC TCGCGGCGGC CGTGGTGTCG CCGGCGCGCG CGCTGCGCGG CGCGGCCGAG
GGCGTGCGCA TCACCTGGTG GATGTTGCTG CGCGGCCTGC TGAGCGCGCT GGTGCCGCTG
GCGCTCGCGG CCGCGACGCT GGGGTCGGTC TGGTGGTACG TGGCGATCTA CTCGCAGGCG
GACAACAGCA GCAGCGGCAA GGCGCCGGTG GCGCAGCAGC AGCAGCAACA GGCGGCGCCC
GAAGCTTCGT CGTCCGGAAC CGGGCTGGCC GAACCGCCGG CGTCCGATGC ACCGAAGGAG
CCCACGGCGG AAGACGGCCT GCAGGAGCCG CCGGGCGGCG TCGAGGAGCC TCCCGGCAGC
GAAGCCGCGG CGCCCGCGGC GGCGGAGGGC GGCCTGCAGC AGCTGGGCGA AGCGGTCGAT
GCGCCGAAGA CCGCCGCCGT GCCCGAGGCC TTCTACACCG GCTTCCTGCT GGCCAGCCTC
TTCACGCTCG CGCTGCTGGC CTGGTACTAC TGGCGCATGG ACGCGGAGCA GTTCGAGATC
CTGCGCATGC TGGTGTCGTC GGTGATGCCG CTGGCCACGC TCACGCTGGT GGTGCTGGGC
GTGATCCTGT TCGGCATCAC GACCGCCACC GAGTCGGCCG CGGTGGGCGC GGCCGGCGCC
TTCCTGATGG CGTGGCAGGC CGGCACGCTG AACTTCAAGA AGACCAAGGA GGCCGTGTTC
CTCACGCTCA AGACCACCTC GATGGTGTGC TGGCTGTTCG TGGGCTCGGC GCTGTTCTCG
GCGGTGTTCG CGCTGCTGGG CGGCCAGCGC ATCGTCGAGG AATGGGTGCT GGGCATGAAC
TTGAGCCCGC TGCAGTTCCT GCTGCTGTCG CAGGCGATCA TCTTCATCCT GGGCTGGCCG
CTCGAATGGA CCGAGATCAT CGTGATCTTC GTGCCCATCT TCCTGCCGCT GCTCGCGCAC
TTCCAGATCG ACCCGCTGCT GTTCGGCGTG CTGGTGTTCG TGAACCTGCA GGCGGCGTTC
CTCTCGCCGC CGGTGGCGAT GTCGGCCTTC TACCTGAAGG GCGTGTCGCC GCCGCACGTG
ACGCTCAACC AGATCTTCGC GGGGATGATG CCCTACATGC TGATCGTGAT CCTGTGCATG
GTGTTCATGT ACATCTGGCC GGGGCTGACG CTGTGGCTGC CGCAGTACCT GTATGGATGA
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| Protein sequence | MSEPALGLSM LGLIVVVIML GFPTAFTLMG LGMFFGFIAF YDPAAHWLDN RIFDLMVQRA
FGAMTNETLL SIPLFVLMGY VMERGALVDK MFHSVQLAFR RVPGSLAVTT LIVCTFWGIA
SGLVGAVVVL MGVIAMRPML NAGYDTRLAA GVITAGGTLG ILIPPSVMII VYAAVAGQSV
VKLYAAAMFP GFFLAFLYLV YVIGWAMLQP KVAPKLPADQ QRAPVSPWVA HIAASYSPRM
LPALAAAVVS PARALRGAAE GVRITWWMLL RGLLSALVPL ALAAATLGSV WWYVAIYSQA
DNSSSGKAPV AQQQQQQAAP EASSSGTGLA EPPASDAPKE PTAEDGLQEP PGGVEEPPGS
EAAAPAAAEG GLQQLGEAVD APKTAAVPEA FYTGFLLASL FTLALLAWYY WRMDAEQFEI
LRMLVSSVMP LATLTLVVLG VILFGITTAT ESAAVGAAGA FLMAWQAGTL NFKKTKEAVF
LTLKTTSMVC WLFVGSALFS AVFALLGGQR IVEEWVLGMN LSPLQFLLLS QAIIFILGWP
LEWTEIIVIF VPIFLPLLAH FQIDPLLFGV LVFVNLQAAF LSPPVAMSAF YLKGVSPPHV
TLNQIFAGMM PYMLIVILCM VFMYIWPGLT LWLPQYLYG
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