| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4948 |
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| Symbol | |
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| ID | 7974230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5256529 |
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| End bp | 5256990 |
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| Gene Length | 462 bp |
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| Protein Length | 153 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644795543 |
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| Product | Peptidoglycan-binding LysM |
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| Protein accession | YP_002946818 |
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| Protein GI | 239817908 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTTTGC TTAGTTTCAT CAAGGAAGCC GGCGAGAAGC TGTTCGGCGG ATCGTCGGCG
CAGGCGGCCG AGCCGGACGC CAACGCCAAG GCCGCGGCCG CCATCAAGAG CTACATCGAG
ACGCAGAATC TCGGCCTCAC GGGCCTGGAA GTGACCTACA CCGCGAGCAG CGGCGTGGTG
ACGCTGTCCG GCCAGGCGCC TTCGCAGGAA GCCAGCGAAA AAGCCGCGCT GGCCGCGGGC
AACGTGGCGA ACGTGACGAG CGTCGACAAC AACCTGGTCG CACCGCCCGC CCCGCCGGCG
CAGTACCACG ACGTGGTGAA GGGCGACACG CTGTCGGCCA TCTCCAAGAA GTACTACGGC
GACGCCAACA AGTACAACGC GATCTTCGAG GCGAACAAGC CGATGCTGAG CCATCCGGAC
AAGATATATC CGGGGCAGAA GCTGCGCATT CCGGCGCTGT GA
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| Protein sequence | MGLLSFIKEA GEKLFGGSSA QAAEPDANAK AAAAIKSYIE TQNLGLTGLE VTYTASSGVV
TLSGQAPSQE ASEKAALAAG NVANVTSVDN NLVAPPAPPA QYHDVVKGDT LSAISKKYYG
DANKYNAIFE ANKPMLSHPD KIYPGQKLRI PAL
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