| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4935 |
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| Symbol | |
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| ID | 7974217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5241990 |
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| End bp | 5243159 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644795530 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002946805 |
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| Protein GI | 239817895 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.682713 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAAGC TCAAGACAGT GACGACCCTG GCCGTGCTGG GCCTGGCCGC AGCGTTCGCG
TCCGCGCAGC AGCAACAGGG CGTGAGCAAG GACGAGATCC GCATCGGCAC GATCCAGGAC
CTGTCGGGCC CGCTCGCGGG CTTCGGCAAG CAGGCGCGCA ACGGCATGCA GCTGCGCGTG
GACGAGCTCA ACGAGCAGGG CAGCATCAAC GGCCGCAAGC TCAAGCTCTT CGTCGAGGAC
TCGGGCTACG ACCCGAAGAA GGCGGTGCTC GCGGCGCAGA AGCTGGTGAA CCAGGAGAAG
ATCTTCATCA TGGCCGGCCA CATCGGCACG GCGCAGAACA TGGCGGCCAT GCCGGTGCAG
TTCGAGAAGA ACATCGTCAA CTTCATGCCG ATCACCGCGG CGCGCGAGAT GTACGAGCCG
CTGAACCGGC TCAAGTATTC GTTCGCCGCC ACCTACTACG ACCAGATCCG CCTGGCGCTG
CCCAAGATGA TCAAGGAGAA GGGCGCCAAG AAGGTCTGCA CCATCTACCA GGACGACGAG
TTCGGGCTCG AAGTGCAGCG CGGCGCCGAG GCGGGCCTGA AGGCCGCCGG CATGGAACTG
GCCGAAAAAA CATCGTTCAA GCGCGGCGCC ACCGACTTCA GCTCGCAGGT CGCCAAGATG
AAGGCCGCCA ACTGCGACCT CGTGGTGCTT GGCACCATCA TCCGCGAGAC CATCGGCACT
GTGGGCGAGG CGCGCAAGAC CGGCTTCAAC CCGACCTTCC TGGGATCGAG CGCGTCCTAC
ACCGACCTGA TCCACAAGCT CGGCGGCAAG GCGATGGACG GCATCTACGC CACCATGACG
GTGCAGAACC CCTACACCGA CGAGCAGTCC CAGCCGCTGC GCTTCTGGGC CAACAAGTAC
AAGACCAAGT TCAACGAAGA CCCGACGGTG TTCTCGGTGT ACGGCTACGT CATCATCGAT
TCGTTCATCA AGGCGGCGCA GAAGGCCGGC CCGAACCTCA CGACCGACAG CTTCATCAAG
GCCATGGACA GCATGGTCTT CGAGCCCGAC ATGTTCGGCA GCCCGAAGAG CAGCTACACC
GCCACCAAGC GCCTGGGCAA CGACCAGTCG CGCCTGTCCC AGATCAAGGA CGGGAAATGG
GTCGTGGTTT CCGACTATGT GACACCGTAA
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| Protein sequence | MMKLKTVTTL AVLGLAAAFA SAQQQQGVSK DEIRIGTIQD LSGPLAGFGK QARNGMQLRV
DELNEQGSIN GRKLKLFVED SGYDPKKAVL AAQKLVNQEK IFIMAGHIGT AQNMAAMPVQ
FEKNIVNFMP ITAAREMYEP LNRLKYSFAA TYYDQIRLAL PKMIKEKGAK KVCTIYQDDE
FGLEVQRGAE AGLKAAGMEL AEKTSFKRGA TDFSSQVAKM KAANCDLVVL GTIIRETIGT
VGEARKTGFN PTFLGSSASY TDLIHKLGGK AMDGIYATMT VQNPYTDEQS QPLRFWANKY
KTKFNEDPTV FSVYGYVIID SFIKAAQKAG PNLTTDSFIK AMDSMVFEPD MFGSPKSSYT
ATKRLGNDQS RLSQIKDGKW VVVSDYVTP
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