| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4932 |
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| Symbol | |
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| ID | 7974214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5239957 |
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| End bp | 5240703 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795527 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002946802 |
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| Protein GI | 239817892 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.124334 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGACCAGG TGCTCTTGAT CACGGGCGGC GGCCGCGGCA TCGGCGCCGC CACCGCCCTG
CTGGCGGCGC AGCGCGGCTA CGCGGTGGCC GTCAACTACG CGAACAACTC GCTCGCCGCC
GACGAGGTGG TGCGCGCCAT CCGCGCGGGC GGCGGCAGCG CCATGGCCGT GCAGGCCGAC
GTGGGCGACG AGGCCCAGGT GCTGGCCATG TTCGAGAAGG TCGATGCCAG GCTCGGCCGG
CTCACGGCGC TGGTCAACAA TGCCGGCGTC GTCGACGTGC AGGCCCGGGT CGACGAAATG
AGCGTGGCGC GCCTGGAACG CATGTTCCGC ATCAACGTGA TCGGCAGCTT CCTCTGCGCG
CGCGAGGCGG TGCGGCGCAT GAGCACCCGG CACGGCGGGT CGGGCGGCGC CATCGTCAAC
GTCTCGAGTG CCGCCGCGCG GCTGGGCTCG CCCGGCCAGT ATGTCGACTA CGCGGCTGCC
AAGGGCGCGA TCGACACCTT CACCATCGGC CTGGCCAAGG AAGTGGCCGC CGAGGGCATC
CGCGTCAACG CGGTGCGACC GGGCCTGATC GACACCGAGA TCCACGCCTC CGGCGGCATG
CCGGGCCGCG CCTTCGAGCT CGCGCCCACC GTGCCGATGC AGCGCACCGG CAGCGCCGAC
GAAATTGCCG GCGCGATCCT GTGGCTGCTG TCCGCCGAAG CGAGCTACAC CACCATGGCG
CTGCTCGACG TGACCGGGGG AAGGTAG
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| Protein sequence | MDQVLLITGG GRGIGAATAL LAAQRGYAVA VNYANNSLAA DEVVRAIRAG GGSAMAVQAD
VGDEAQVLAM FEKVDARLGR LTALVNNAGV VDVQARVDEM SVARLERMFR INVIGSFLCA
REAVRRMSTR HGGSGGAIVN VSSAAARLGS PGQYVDYAAA KGAIDTFTIG LAKEVAAEGI
RVNAVRPGLI DTEIHASGGM PGRAFELAPT VPMQRTGSAD EIAGAILWLL SAEASYTTMA
LLDVTGGR
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