Gene Vapar_4931 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4931 
Symbol 
ID7974213 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5239213 
End bp5239812 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content69% 
IMG OID644795526 
ProductDSBA oxidoreductase 
Protein accessionYP_002946801 
Protein GI239817891 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3917] 2-hydroxychromene-2-carboxylate isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.11555 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACAAGA CGATCGACTA CTACTTTGCG CCACAGAGCC CGTGGACCTA TCTGGGGCAT 
TCCCGCTTTG CCGCGATCGC CGCGGCCGCC GGCGCCACGG TGCGCGTGCG GCCGATCGAC
CTGGGCAGCG TGTTCCCGGT GTCGGGCGGG CTGCCGCTGG GCAAGCGCGC GCCGCAGCGC
CAGGCCTACC GGCTGGTCGA CCTCGCACGC TGCTCGCGCC ACCTGGGCCT GCCGCTGAAC
ACCAAGCCGA AGTTCTTTCC GGTGGCCAGC GACGACGCGG CCCGGGTCAT CATCGCGGTC
GACATGCACG ACGGCACCGA GGCCGCCATG CGCATGTGCG CGGCGGTGTT CGCGGCCGTG
TGGGTGCAGG AGCGCAACAT CGGCGACCCG AAGGTGCTCG ATTCGCTGGT GGTCGAATGC
GGGCTGTCGC CCAAGCGCGC GGAGCAGTCG CAGAGCCAGG CGGTGCAGGA GCGTTACGAG
GCTTACACGC AGGAAGCGAT CGACATCCAG GTGTTCGGTG CGCCAAGCTA TGTCATCGAT
GGCGAGATAT TCTGGGGCCA GGACCGGCTC GACTTCGTCG AACGCGCGCT GCGCCAGTAG
 
Protein sequence
MHKTIDYYFA PQSPWTYLGH SRFAAIAAAA GATVRVRPID LGSVFPVSGG LPLGKRAPQR 
QAYRLVDLAR CSRHLGLPLN TKPKFFPVAS DDAARVIIAV DMHDGTEAAM RMCAAVFAAV
WVQERNIGDP KVLDSLVVEC GLSPKRAEQS QSQAVQERYE AYTQEAIDIQ VFGAPSYVID
GEIFWGQDRL DFVERALRQ