Gene Vapar_4922 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4922 
Symbol 
ID7971616 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp5231682 
End bp5232314 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content70% 
IMG OID644795517 
Productputative transmembrane protein 
Protein accessionYP_002946792 
Protein GI239817882 
COG category[R] General function prediction only 
COG ID[COG2945] Predicted hydrolase of the alpha/beta superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.0177754 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTCCC AGACCGAAAA GATCCGCCTC CAGGGCGCCG CCGGCGCCAT CGAGGTGCAG 
CGCGACCAGC CAGCCGAGGC CGCGCGCGGC ATCGCCGTGA TCGCCCATCC GCATCCGCTG 
TTCGGCGGCA CCATGGACAA CAAGGTGGTG CAGACCCTGG CGCGCGCGTT TGTCTCCTGC 
GGCTGGACCG CGGTGCGTTT CAACTTCCGC GGCGTGGGTG CGAGCGAAGG CGTGCACGAC 
GAGGGGCGCG GCGAATGCGA AGACATGATG AACGTCGTCT CCCAGCTCGC GCCCGAAGGC 
CCGCTGGCGA TTGCCGGCTT CTCGTTCGGC GCCTTCGTGG CGAGCTCCGC GGCCGAAAAG 
CTCTGGGCCG GCCGCGACCT GCGGCAGCTC GTGCTGGTTG GAACGGCGGC TTCGCGGTTT 
TCGGTCGCCA CGCTGCCGGC CGAGGCGCAC GAGCGCACGC TGGTGGTCCA CGGCGAGGCC 
GACGACACGG TCCCGCTGGC GGCGGTCATG GACTGGGCGC GGCCGCAGTC ACTGCCTGTC 
ACGGTTATTC CGGGGGGCGG CCATTTCTTT CACGGACAAT TGCCCCTCCT CAAAAGCCTG 
GTCGTCCGCC ATCTGCGCGC GGGCGCCGCA TGA
 
Protein sequence
MNSQTEKIRL QGAAGAIEVQ RDQPAEAARG IAVIAHPHPL FGGTMDNKVV QTLARAFVSC 
GWTAVRFNFR GVGASEGVHD EGRGECEDMM NVVSQLAPEG PLAIAGFSFG AFVASSAAEK 
LWAGRDLRQL VLVGTAASRF SVATLPAEAH ERTLVVHGEA DDTVPLAAVM DWARPQSLPV 
TVIPGGGHFF HGQLPLLKSL VVRHLRAGAA