| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4921 |
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| Symbol | |
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| ID | 7971615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5230460 |
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| End bp | 5231629 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795516 |
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| Product | Beta-lactamase |
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| Protein accession | YP_002946791 |
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| Protein GI | 239817881 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1686] D-alanyl-D-alanine carboxypeptidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0610644 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCGTT TTTTTGACGC GTTTCGCGCG CTGGTGCTGG CCGCCGCCGC ATCGGTTGGC
ATGATCGCCG CTGCCCAGGT GCCGGCACCG CCCGAGATCG CCGCGCGCAG CTACCTGCTG
CTCGACGTCA CGGCCAACCA GATCCTTGCG CAGAAGGACA TCGACAGCCC GGTCGAACCG
GCGTCGCTCA CCAAGCTGAT GTCGGCCTAC ATCGTGTTCG ACGCGCTGCG CGCCAAGAAG
ATCACGCTGA CCCAGACCAT GCCGGTCAGC CAACGCGCCT GGAAGATGCC CGGTTCGCGC
ATGTTCATCG ATCCCAAGAT GCAGGTGCCG GTCGAAGACC TGATCAAGGG GCTGATCGTG
CAGTCGGGCA ACGACGCCAC CGTGGCGCTG GCCGAAGGCG TGGGCGGCAC CGTGGAGCAT
TTCGTCGAGC TCATGAACGC CCAGGCCAAG GCGCTGGGCA TGAAGAACAC GAGCTACAAG
AACCCCGAAG GCCTCACCGC GCCCGGCCAC ACCACCACGG CGCGCGACCT GAGCATCCTT
GCGACCCGCC TGGTGCGCGA CTTCCCGGAA GAAGCCAAGT ACTACGCGAT CAAGAAGTAC
CGCTACCCCG GCACGCCCTC GACCAACGAC ACCAACCGCA ACCTGCTGCT GTTCCGCGAC
CCCACCGTCG ACGGCCTGAA GACCGGCCAC ACCGAAGCGG CCGGCTACTG CATGATCGCC
ACCGCCAAGC GCGACTTCCC CAACCTGACC GGCGGGCGCC GGCTGCTGTC GATCGTGCTG
GGCACCTCGG GCGAGACCGT GCGCGCGAAC GAATCGCAAA AGCTCCTGAA CTGGGGCTAC
ACCGCCTACG ACGCCGTGCG CCTGTTCGAC GCCGGCCAGC CGGCCGCCAC GCCGGCGGTC
TGGAAGGGCA AGGCCAACAC GCTCAAGCTG GGCCGCCCGG AAGCCATCGT GGTCGCGGTA
CCGGCCGGTA CCGCCAGCAA GATCAAGACC CAGGTGGCGC GCCCCGATCC GCTGGTGGCG
CCGTTCACCA AGTACCAGCC GGTGGGCTCG CTCAAGGTGA CGCTGGACGA CCAGCCGCTG
GCGGACGTGC CGCTGGTGGC GCTGGAAGGC GTCGAGCAGG CCGGCATCCT CGGCCGCGCC
TGGGACGCCG TCCGGCTCTG GATCAAGTAA
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| Protein sequence | MNRFFDAFRA LVLAAAASVG MIAAAQVPAP PEIAARSYLL LDVTANQILA QKDIDSPVEP
ASLTKLMSAY IVFDALRAKK ITLTQTMPVS QRAWKMPGSR MFIDPKMQVP VEDLIKGLIV
QSGNDATVAL AEGVGGTVEH FVELMNAQAK ALGMKNTSYK NPEGLTAPGH TTTARDLSIL
ATRLVRDFPE EAKYYAIKKY RYPGTPSTND TNRNLLLFRD PTVDGLKTGH TEAAGYCMIA
TAKRDFPNLT GGRRLLSIVL GTSGETVRAN ESQKLLNWGY TAYDAVRLFD AGQPAATPAV
WKGKANTLKL GRPEAIVVAV PAGTASKIKT QVARPDPLVA PFTKYQPVGS LKVTLDDQPL
ADVPLVALEG VEQAGILGRA WDAVRLWIK
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